RNA id: TU307914


Basic Information

Item Value
RNA id TU307914
length 2218
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G227021
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10223494 ~ 10225897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccaatAAATTCATTTATTATGTTGTGGGACAACATTTACAAACCTCACTGTCCAAGTACAGCTGTTGCACCGTTTTGACAACAGCATGCCCTGAAAATATGGCAAAACGTCACCTTTCTCACTATTATTAAAGACAAGAATATTATTCTTACTCTCGTGCTGCAGTTAAAGGCATCAAATTGCTTTTTTTCAATGATTTCCTCAATACATAGGCAATTAATGAATTTGGAGCCTGCAAAATTGAAAAGACTGCAATTCATTGCTGCAAAAAATGCAAGCTTACAAAACACTTGATGATCCAAACATATGTATTAAAGTTATGAAATCAGGTGAATCCATTCATATCATAGCTCCTAAGGGGAAATTAACAATTATGCACATATTTGTTTATTCATTCAATGAGTATGGCCCTCTGTGATGGGGGAAAATAATCATATTTacaaatatatcaaaataaCAGATTTAAGGGATATTTGCCATAAAACATTCAATTACTATACAAATTGATTCTCAGTCACAGCATTCTAACAAGAGTAGAACAAAAGCACTTGTGGCATCATAAATTAACAATCATCAATTTCCAACTACATATCATCTGATATTGATGCTTAATTTGTTCGACTACGTTTCATCCAGGCTATTTACATGCATGTATGCAAGCCATACTTGGCTGTGGTTTTATTGCTATAAATTGTAATATAcgtattttcaaaaaaaacaaaacaacaacaaacacttaCATATTCTCCCATAACTTGACATTTACCAAGTGAGAGAATTAAAACATGGAGATTCAAGTGAGATAAACGTTTGTGAAAAAAATTCAGTGTTCGAAAAATAACCCATATTGTAGGACAATCTACAATCAACAGAAAGTCGAGAGATCTGTGTGAGAAGGTTGAGGACAGTTTAAGGGGTTAATGGGTCAATACTTGCAAAAACCCAACATTAGCAAACGTGAACAATCAAGAAGTGAGGAAATACAATCAGTGAATATACATTCAATTGCAGTCACTAGAGGAACCGACTCACTGTGAACTAAATGAAGGCTACGTCAGGATAAGGGTCTAAGGAGCTTTATCATTCCTTATAAAATAACCACAACAGTTCATGAACTGAATGGAAAAACAGAACCCTGAAAAGGAATGACAGAATAATGTTAGCACTAATTTAAATCAGGTTAAATCTGACACAATAATGTCAACATAAGGGCTCGCATTGTCCAAAATAAATCTAACAATTAACATACATGGACTGGTTtctaaaaaaaaggcagaaatggTTTCAAACCTAAAATAGATTATTATAAAAAGGGTCATCTCCCTTAATTAATCCATAGTGGCTTGCATATTTAGGCTGCATGTGTCATCCCAGTGTTTTgtttaaacaatatataaattCACACATACATTTCATCCAATATATACTTGaaaggctatttttttttttgtaacagcATAAATGGGATTCTAAGTAACATATCATACACTGACAGCAATTTTTCTCCTGCGATCTTCTTCGCCAATCTGTGGAAAGCAACATTTCAAGTGGTCCTTTAGTAATCTGCAACTTCTCTTTTCCGGCCTTCTCCAACACCAGTCCAGTCTTCGCCAACAGGGAGAAAAGGGTTAAAAATATCGTTTCCAGCCGCACTGTCATTTCGCAACACACCACTTTCTTCACATTtattcatttgtaataattcatTACTGGATGTCTTCCACATAGTTAGCAGGATAGAGGCCTGTTTTTCCATCCTTGAGCCGGCCTTTGCACCAACCCTGATCATCTTCTTCACCTATTTTGGTGAACTCATCACCTGCTTTAAAGGTAAGCTCATCCTGCTCCTGGCCTTCATAGTCATAGAGGGCTTTGACAGGCACAGATATGACGGGAGAAGCCGGCTCATCTTCGAATGGATTCCCATCACCGTTGGAGGAGAAAGGGTTACCACCTGTGTCTTCATCTGACCAGTCTGGAGTCTTCTCCGTACTGCTGGCACTGGATGGACAGACAAATAGCCacttagaaaatgtattttcttgttCATCTCCGGGCCTTAGGCATCAACGGGACATTCCAGCATGCCAGGGGTAAGCAGGAACAAAAGTTCAAAGTTAGAAAAAgcgagaaaaataaatataacaccAAGTCAAGTtatgtcaacacacacaaaaagcccAAAGTGCATTTTCAAATCTGGGACAGCTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307910 lncRNA downstream 3044 10218086 ~ 10220450 (-) True G227019
TU307780 lncRNA downstream 480934 9742004 ~ 9742560 (-) True G226917
TU307615 lncRNA downstream 1103523 9116810 ~ 9119971 (-) True G226803
TU307611 lncRNA downstream 1183637 9037771 ~ 9039857 (-) True G226800
TU307604 lncRNA downstream 1194124 9029046 ~ 9029370 (-) True G226797
TU307913 lncRNA upstream 48435 10274332 ~ 10284085 (-) True G227020
XR_005638174.1 lncRNA upstream 283834 10509731 ~ 10537837 (-) True LOC120553506
TU308027 lncRNA upstream 312307 10538204 ~ 10538416 (-) True G227089
TU308074 lncRNA upstream 376697 10602594 ~ 10658927 (-) True G227127
XR_005638112.1 lncRNA upstream 413850 10639747 ~ 10660499 (-) True LOC120553135
XM_039792083.1 mRNA downstream 36521 10183285 ~ 10186973 (-) True bik
XM_039791578.1 mRNA downstream 70340 10147639 ~ 10153154 (-) False si:ch73-352p4.8
XM_039791577.1 mRNA downstream 70340 10147639 ~ 10153154 (-) True si:ch73-352p4.8
XM_039791579.1 mRNA downstream 70343 10147639 ~ 10153151 (-) False si:ch73-352p4.8
XM_039791572.1 mRNA downstream 82788 10138942 ~ 10140706 (-) True rhno1
XM_039792478.1 mRNA upstream 16775 10242672 ~ 10247265 (-) True ckap4
XM_039791995.1 mRNA upstream 38088 10263985 ~ 10264705 (-) True LOC120553502
XM_039791796.1 mRNA upstream 338533 10564430 ~ 10623168 (-) False apaf1
XM_039791797.1 mRNA upstream 338533 10564430 ~ 10623168 (-) False apaf1
XM_039791795.1 mRNA upstream 338533 10564430 ~ 10623168 (-) True apaf1
unassigned_transcript_1485 other downstream 27061 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 27624 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 1468662 8572959 ~ 8754832 (-) False ppfia2
XR_005638145.1 other downstream 1537556 8565242 ~ 8685938 (-) False ppfia2
TU308019 other upstream 287597 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 754301 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 1398112 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 1613047 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 2059029 12284926 ~ 12288154 (-) True G227429

Expression Profile