RNA id: TU308074


Basic Information

Item Value
RNA id TU308074
length 1329
lncRNA type read_through
GC content 0.37
exon number 2
gene id G227127
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10602594 ~ 10658927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCTTTGAGAGTATTAGATTGTGTACTTTGCTTTATATGTACAGATTTATCATTGAACACCtcagagaccagcacctcaacacataaaacaaggaCCACACACTACACATATATTGAAAGCAGTGGTATACAAACAATCTTGTAGAAGAATAAGCTTTAATTTTCTGCTTTGAGGTTCTGCCAGGAGATGAGACAGACGCTTGACAGGTCACATCCACTTTGTGATTAAATTAAAATTGCCGATCTACACGTGACAAAGctccaatcacaaacatttgtAGTCTTATGGGACAAATATGGGGAATTGCGCAAAGTCAAATTCACAAGCAAGTAACAACTGCCATGCGGCTGGAGAGAGCTCACCCTGTAAAGTTGGCATTATTACACAAAAACTAAAGTTATCTGATAACCGACATTACACTTCAGCATAACAACAATCATTGTCAGCAGAAACAGTGTGTCCAAGGTGCATCTAAAAACCCTAACGTGGTGTAATTCTCTTCAAAACTGTAATATTTAGAATGAGGACACATTAATGTGCAGCTGTTCAGAAAATCTGACACACCTACATAATTATTGTAGGTCGGTGGAGATGAAGGTAAGGACACATCAACGGCTGCTTGAGCCAATCGATAAGCACCCTTAACAACCAATAAGGATTATTGCACACAACTCATCTAAGGCCTCTTAACCATTATCAGAAGGACATAAAAATGCCAATGCCCTTACAGAGCAATCCTTCTTTAAATAACTATATATTTACACTTCATAACAATATGTCACCAGCACAGCTCCTCAGACAGCTGAAAAGTGGTGAAATCAAAATATATAGTGATAATCTCCATTGTACAAATTGGTCAACAGAAATGGTGCACTGCAGAATTGCGATTGAGACCCTTAAAAACTTCATCGGAGCTGaatgtgtgagaaaaaaaaaagtcactggAATCATTAGGAATCATTAGTAGAAAAGATGCTAAAAATCTAACTTTAGATCTGTTGTGGTCAAGTTCAGTAACATGCAACAAAGCAAGTAATTAGAGAAGCAAATGCCAGACAGCtgattttaaaaaaggaaaaaattaaTACTTGAGTAACCGATGAGTGCCGGTCCTACATGTGTACACGTGTAAGGCGTCGTAATAGCCTAAGCAGTGCATATGGTCCTTGATCATCGCCTTTTAGCATTAGCATCTTGTTAAAAAGGACACTGCTGTAATAGCTTCTCCACACATCCTATTCCACTGTAAGACACAGATAAATCATTCATACTGAATTTACAGAAAttgatatgatttttttttttttttttttttttttttaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308027 lncRNA downstream 64178 10538204 ~ 10538416 (-) True G227089
XR_005638174.1 lncRNA downstream 64757 10509731 ~ 10537837 (-) True LOC120553506
TU307912 lncRNA downstream 318509 10220956 ~ 10284085 (-) False G227020
TU307913 lncRNA downstream 318509 10274332 ~ 10284085 (-) True G227020
TU307914 lncRNA downstream 376697 10223494 ~ 10225897 (-) True G227021
XR_005638210.1 lncRNA upstream 281451 10940378 ~ 10942825 (-) False LOC120553801
TU308148 lncRNA upstream 281462 10940389 ~ 10942789 (-) True LOC120553801
TU308149 lncRNA upstream 281462 10940389 ~ 10942789 (-) False LOC120553801
XR_005638209.1 lncRNA upstream 281665 10940592 ~ 10942825 (-) False LOC120553801
TU308150 lncRNA upstream 282104 10941031 ~ 10942789 (-) False LOC120553801
XM_039791995.1 mRNA downstream 337889 10263985 ~ 10264705 (-) True LOC120553502
XM_039792478.1 mRNA downstream 355329 10242672 ~ 10247265 (-) True ckap4
XM_039792083.1 mRNA downstream 415621 10183285 ~ 10186973 (-) True bik
XM_039791577.1 mRNA downstream 449440 10147639 ~ 10153154 (-) True si:ch73-352p4.8
XM_039791224.1 mRNA upstream 1993 10660920 ~ 10665486 (-) False si:ch211-244b2.3
XM_039791223.1 mRNA upstream 1993 10660920 ~ 10665486 (-) True si:ch211-244b2.3
XM_039791226.1 mRNA upstream 7575 10666502 ~ 10671184 (-) False si:ch211-244b2.4
XM_039791225.1 mRNA upstream 7575 10666502 ~ 10671184 (-) True si:ch211-244b2.4
XM_039791227.1 mRNA upstream 15532 10674459 ~ 10694296 (-) True epyc
TU308019 other downstream 79632 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 406161 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 406724 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 1847762 8572959 ~ 8754832 (-) False ppfia2
XR_005638148.1 other downstream 1916657 8565242 ~ 8685937 (-) False ppfia2
TU308180 other upstream 321271 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 965082 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 1180017 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 1625999 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2861338 13520265 ~ 13529778 (-) False LOC120553470

Expression Profile