RNA id: TU308091


Basic Information

Item Value
RNA id TU308091
length 3608
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G227139
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10705910 ~ 10709545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAAATGGCCCAAGAAACTTTTTGATGAACCTGCATTAATCATTCTTTCAATTAATCACTTTTGACTACAAGTGAACCTAAAAAGCCAAATATGCAGACTAAAATGTATCTTATTCGAAACAGGACACTAGGACAGACCTCTCTGAGAACTGTTTGTGTTAACGCTCCACAGGAAAgcattactgaaaaaataaagtactTTGAAATTGTCATGGGATATTTGTGGTTTCTGTCTGAGACAGTTGAAAGGGTAGATTTACGCAGAAAATATCTTAAAGCTGCTGTATTGAGAAAAACCCTGCAACCCCTGCATCCCTCCAGGACCAgcagtttttttgtttcactCACAGCTACATTGAAAAGTAGGACAATAAAAATGATAGGTTCGTTATGTAACTACTGCAAATAAACTTGAGAGGCACAAAATTAAATCTGGGGAACACAagctacagatgaaaaatacaaGGTACGGCTCCTTGAAATCAGTTGGGCCATGAATGTAAACACAATATCTTAAATGCATCTTCCATTCGTTTTAAAAACTCTTTCCTTTTGTTAATCTCAAAGATTTAGGCCAGAAAGGAAGATGATAGCTGCCAAAAATGACAGCACACTCCACAGAGTAATTCTGCAACAAATCATGCCCTGTCATAATGCTCAGGTTATATACTGTAGTATCTCTGTGGACAAGACTGACTGTCGATTGTGCTGTTCTGTTTGTTGTCTCCGTTCACTTGGCTTTACCTTGTTCCTAAAACCAGACTATAAGAGAGGGGTTTCTAATGTTTATTATTCATATGGTCACTATGTGTTTTGAACCATTATAGAGCAATATGAATCTCAATTCACAATGCAGTCAGTGACATCAATGCAGAAATTCGCAGAGATACCCAAATGTGGttaaattgttttattatatCTGGCACCCCAACCCCAACGTTGTCTTTATTAGTGGCTAATTacggatttataaagaattaaTCTAAGATTTACTATTTTTTAAACCATTATTTATAAACCCTTTATAAGAGATACCttattaaaggtccagtgtgtaatgtttttagttgttcattatcaaaatctgtgttgccccttcacaaacttgtccttttcatgaatatttaccaccaccatcaattgcAAGTATTCcctttggcttgaaattttacatttgcgtttgcatgaactggggtagacgctccatattaaTGCGCCATATTGAAATACGgtagccagtaagggacatacaggacatactgctctgcctttcgcgttttcgctgtcacatgataaacttgCAGatgctgctaacgctgctaatgAGTATGGTAGCTTCCCGGCCCTGCAAAGTTTGAataaggaaacatggaggaccacacatattcaaaatccaaatttcaggaacaggagtctttttcttcgcccagaaaaagaaaaaggatattgaaaagagcaagagaccggtgtcatcagaaaaaaagtgtgaaggctaccgtagctgtaatacgtactttgaactgcgtggtgcgagagagttgattgcgatatatgatctcaacactaggtgggagaaattcccacacattggacctttaagaagtggtgcacaaattaaagttttagcAAAAAAATTTACCAgcaaataaaatcaacatacaAGACCatcctttcatttcatttatccTGTATCAAATAATATGGCTTTATCAATTTGTTTCCATACATGCTCGAAATTAATTACAGCAGCCTTAAAAAGCGATATCatacaaatactgtatgttggaaacatattttattcaactttatttaAAGTGTGTGTCCGGTTTTCTCACAGCAAATCCAAGAGCAGTTACCGAGTCAAAGGCCACAAAAGAAATCatgataaaatgaaaaatgacctaaacataatGTGATATTCTAATAACATAACTTCATTAATGACAATCCTGAATTCAAGACACTGCTGTCAAGTTGACTTTGTATCAGTAAGAAGCATTTATCAACCATGGTGAACAACAACGTAACAATGAgagcgccttaactgcaaaagCTGTAGTTTATTATAAAAGAATGGTACCATTGGTTGCATGCAAGTAATGCAAATGTATACAAATCAGCAATGCGCATGAAAGTGGACAGCTATGAAGTAAGATAACGTAAAGAAACAATTTGACTCTTCAATCATTTCAACGTTTAACTGAGCAGAGAAAGTACAGTAGTTTAAAGGATAGTACCAATGCCTTTTAATCATGTGTCATTTATTCTACTCTTCACAAAGAGCTAAGTCCTACTTAAATTTGGGTTGAAGGAGTTATTTTCGTGAAGAAATAGAAATGTCTTAGTtggtatatatacagtatatatatatatatgtgtgtgtgtgtactttataGTTCAAAGGAGTCAATCAGTGGGACATCAGGGTATTTGCATCAGGGCACCATTTGTAAAAAAGGCAGACACAAGTAAATAACAATGGTATTTACCTTAAAACCACTTTGATTAATTCAGGAGTTGAAAAATGTGACTTCTATGTTACtgctgttttacattttttcataATTTCTCACATTGGGCACTACACACTGAAATCTGAGTACATAGTCCTTGTTTGCTGGTCCTTTGCACAGCAATGGATTATTTGTTGTACCCACATTATATTATACATGCTAAACATTAGAACATACAAGACAGACAACAAAATGACGATTGATGATTGAATTGAGACATTGGAGCCATCATTTACTCCATTGTGTCTGAATTCAATGTAATAAAATGCAAGTTTGGAATgtttaaagtgtgtgtttttcaaagCATATGAATCAATTTTTATTCATAGAACTTTTGGTCCTttactttttgtatttttgtatttttttttgtctattttttgcCTTCATGTTTATGTGAACAATTAGAATGTTCAAAAGATTTAAAAACCTTTGTTTGATGTTTGATGAATTTAACTGATGTTTGCCAATAGTATGTTGCAAACTTGTTGCTAGCTTCTCTTGCCATCAAATTTGCCCAGCTCTTGATTTATTcaagatatatattttaattgatgAAGATGCCATTACAGTGCATCAGATTTGCATTAGCATTTACTACTTATGTGCAAGGACATGTGAGCACTATGTCAGGAGGGATATTACACCATTTTAATCCAGAAGGCTTTGGTCTGAGCCATATAATGGTAGTAGAAAAGGGGGTAATGGAAAGGTCATAGATTTGAGGGAGGTCCTTATTCAAAAATGACATCTGAAAGTTGGCGCAGGCAGTTGGAGGTGTCAGGGGGCATGCtgctgtgtgtgatgttgtTGCCGTCCAGACGCAGATGGTTCAGGTGGGAATAGTTGACAGGAGTTATGTACTTGCAGAAACTTGCCAGGTCAAACTCTACAGAGAATCAAAAATGGAGAGAAGTTATTATATACCTTTCAACCACCTTATACTGGGGGTCAAAGGTACTCTTGGGAGTTTGTGACCACTAAGACGAGGAAGCAGGCAATACACAATTCCTGTGGTTTAATGCTATTTTTCTAATGGAAGTCGATAACGCACAAAGATACAATGCACCTGCAAAGGCAGTGAAGAAGAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308058 lncRNA upstream 38630 10665709 ~ 10667280 (+) True G227116
TU308048 lncRNA upstream 75698 10628808 ~ 10630212 (+) True G227108
TU308047 lncRNA upstream 77928 10625446 ~ 10627982 (+) True G227107
TU308026 lncRNA upstream 167221 10538196 ~ 10538689 (+) True G227088
XR_005638107.1 lncRNA upstream 769317 9934175 ~ 9936593 (+) True LOC120553125
XR_005638094.1 lncRNA downstream 51708 10761253 ~ 10770671 (+) True LOC120553079
TU308111 lncRNA downstream 133011 10842556 ~ 10851804 (+) True G227152
TU308112 lncRNA downstream 133011 10842556 ~ 10851951 (+) False G227152
TU308118 lncRNA downstream 162502 10872047 ~ 10872679 (+) True G227155
TU308115 lncRNA downstream 162555 10872100 ~ 10872679 (+) False G227155
XM_039791229.1 mRNA upstream 31859 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791219.1 mRNA upstream 46899 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA upstream 46899 10648321 ~ 10659011 (+) False scyl2
XM_039791221.1 mRNA upstream 62139 10638588 ~ 10643771 (+) True depdc4
XM_039792001.1 mRNA upstream 183673 10377618 ~ 10522237 (+) False anks1b
XM_039791053.1 mRNA downstream 238741 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA downstream 238741 10948286 ~ 10986201 (+) False impdh1b
XM_039791055.1 mRNA downstream 238742 10948287 ~ 10986201 (+) False impdh1b
XM_039791056.1 mRNA downstream 238742 10948287 ~ 10986201 (+) False impdh1b
XM_039791058.1 mRNA downstream 241718 10951263 ~ 10986201 (+) False impdh1b
TU308063 other upstream 6192 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 510704 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 511394 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 513498 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 1464561 9237264 ~ 9241349 (+) False ndufb2
TU308097 other downstream 22524 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 238740 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 393291 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 393291 11102836 ~ 11112905 (+) False G227216
TU308276 other downstream 979624 11689169 ~ 11757317 (+) True G227278

Expression Profile