RNA id: TU308112


Basic Information

Item Value
RNA id TU308112
length 6441
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G227152
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10842556 ~ 10851951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGCTCACAGGGGATATGATGCCAAGATAGGAAATCTTTtattacagagaaaaaaaacttttcttccAAAATATAGAAATCTGTACAACTTCCGCACAATCAATTTACATGAACTGTACAAATTTACAGCAGTTCATCACAACATACCcaaggaaaaaaaactgaacacgATAAAGATGTACTGACATGAGATCACAAGATAGACAGCTTTTCTTCTTGGGTAAGCTCAgatttttttgtctattttctGGTTTTGTAcgtaaatagaaaaaaaaaataaaaatagaggaaaaaaatgaaaagaaaagaaaaacaaaggatACGTCTACAATTACAGATCATGGaaactaaatttttttttaccaaaacaACTTTGGTCCTTTCCAACACTCCCATCACAAATGGCTTCACTTACGAAAAGAGTTATCCATGTTAAAAgatgaaatacaaaaaaggaATAAATCTAAAAAACACCTCAGGATAGCAATTATTGGCACTTCCCATGTGTAATGTTATGTACTCTACCATATGTTGTACAGTTACAATACATTCTACAATATGTAAAACAACTCAAATGTGAAAGTGGCAATAATTCAACTAATCCATGACAATTTtgatgacaacaacaaatacaacaaaacTGCTGTTCCCTTCCGGTTTCATGTCTTAACATGCACAACTTCTCCACAAGGGTATTTATTGAATGTCCGAGGCCTGAGTTTGGCAATACATTCCAGGAGAGACTCCTCGCgtctcaaaaaaaaaatgtcacacaaCTTCAACTTGACATATTTAGTGCATTTTATGTGCTATTTTACCTCttgactactcaaagcactctCACAACAATTCTGTAACCTATGTGCGCACAAGCTGAATGGGTGCCATTTAAATAATGAATATTACCTAGGACTTAAAACCATTTTGGGTGGTGGTAGTACAGTTGAGAAGGTGTCCAAGGGGATTTGGGttcatttcttttttgcttttttgtagctctaaaaaaaaacaacaaaaaaaaacaaggtctGTTAAAAATGGGGTTAGATAACCAGACTAAAAATCCTCTTAAAAAAGATAAAGAGGAGAAAATGGGGATGGCAGAGTGGAAAGATGACCATAAAATACATCTAGAGAAAAGTGAAGACGAGACGATCATCTCGTGTTCGAAATATAGACCAATCTCATAACACCTTGTcacatgacataaaaaaaaaaaagaagctataaTGGAGCAGTGCGATTTTAAAGCTGGTGTCCATCATGGAGACCAAAGCTCTGGGCAAGCTCCTCTCCCATCTGGCCAACATGGAATCACTGCTTTTCAGATTGCTGAAGGGAGCATCAGCGGAGAGCAGGGGAGGGGGAGTTAGGGGGTTGCAGTGCGTCAAAGGCTATAGCTCTATTACCCATGAGCCTCTCAGGCTTACGGGAGCTTAAACACCCATCGGTCTAGTGATGAGCGGTGAACCAGCCTGCTGTGACAGATTCGGCCAGTGGCTAAGGCCCAAACGCAGCCCGTAGCCGCCCCCAGCATCTGTTCCAGCTTGCCGTTAACCACTCAGCCCCATAAAACAGGAGTGAGGTGGGGGTACGTCAGACAGCCATCACACCCTTTCATATGCATGTAAACAAAGTTGCTACTCAAACTCAGTAATCGAGTGCAGCACAATCCAGTGAgatgaaaacagaaaacagtgGCCTAGTACCCTCAATTCTTCATCTTTGATCCATGTTTCCACTCTCactagcccccccccccagtgcAGCTTAAGCACGGCAAGCGCGTGTGCTGGTTATGTTTATCCATCACTGCTGAGGGAGGGTTGAGAGTTTGGTAGGGGGATGTTGAATAAGTCCAGAGAGGGGGCTGGAGGGATTTTAGCTGCCCTGAACAAAAAGAGTCCGGCCCTGGGCCCCCCCTCTCTCACACCAGCTCCCCATCCCCGCCTTCCTTACGCAGCTCCTCGCAGTGATGGATGATGATATGTGTCACATTAAGTCTACCTGCATCCACAGGGGGTCAGCTAGCAGCTTGCTCTTGGCTGAAAAGGAGGTCTGAGCTGAGGGGTGATATGTGGCAATTGAGGCACTCTAACTCCCACACCAGGAGGAGTGGGGGAGGTTTGAAGCTGCCAGGCTGGAATATGGACTCCTCCAGTGAGGGTCCAGGCAGCATATGAGCCAGGCTGGCTCAAATAAGCCTGATATTAGTTTTAAAAAATGGCTCATAATTCATGACAATGAGGTCTTATAAGGCAATGCACCTTCAATGCACACATATGGATGTCTCTCCTTTTTACAAGACCTTGGAAAtagctaatttaaataaaaatagaagGCTGACAAGGCCTGTTTTAAACTTAAGTTAAAAtaaattctcaaacagtcggtGCTCCAGACCTCCCTTTGGCCAAAATCTCACACAGTCATCACTTAGTCCAGACCTTTCagaccaacttttttttttttttctatcagcAACACAAATCACCATCGGTGTGTGTCAGGGGGGAAACAGCTTAGCTCTGCATCCTGCCAGAGCGAACAGTGCCATATGAACGGATGACAGAATGGTTCTAATATACCACCCAAAATACTCTCCACCTAAAATCAACGGCTCTGAAATGTTCACAaatacagtgtaaaaaaaaaaagtttaggaaATCCAGAGTTGCACCCTCCCGATTTAATAGACATTAGTCTATTTCCAACGTGAGAGCTACAGAATGAACAAATGGCTAAAAATGGGGAGAGCAATAAAAAAGGTTCTGAAAAGATGACATTCGAATGGATGGAATGCAGGCGATTTTCTCTAAAAAGTACACATCCCACACAATCTCACGTCAAAGTGCATTCAACGTCAATTTTAACAGGGCCACACGACCAAAATGTGGGTAAAATAGGCCCCTTTTTTTGCTACACTTTGAATTTTGGCGATGCAGGAGATGACAAAGTGGTGGAAGGAAAGGGagcaaaataaacaacacaggAACTTGATTGTGATTTTCAACAACATTCATTAActagggggaggggggaggagacgGATCCCCTGCCCTCCCCAGGAAAGCTACACATACATGGGTGATGGGAGGGCGACAGTGCAACAGGACACACTGGTATCCACAGGTAGCAGGTGTCACAACACATTTCACTTGCACTTACATACAGGCGAGACAGAACGCTGAGATCTAGGATTTCTGAGGCTTGGTGTTGATGGTAGAAGGGGGAGGAGGCAAAATTAATACCCAAAGCCTTTTGGCCCCAGCTACAAGATAAAGAAAACTAATTCCCTGTGGTCCAAAAAAGGGGGTCTTATAGAAAATAGAGATGCTCTCATTGGGTGTTTCTTTACCTTGAGCTTGGATTGCAAAAGGCTCAGTCTAAAACTCAACTTCCTCCCTGCTCAGGAAACAAAATAAGTGAAAACAGCAAACTGAATAacatcttcttttcttttttttctattcaagGGGTAGTtggggatttaaaaaaagaaagaaaagaaaatccttaCAATTTGGGTTTTGGTGTTTTGTGGTGGCGTGCTGAACATGTACCCATAGTAACCACAAGTAAGAAAGTGCAAAGTCAATGAAAGCCCCTTCGGGATGGAGCTGACCACCATGTTGTTTACAGGTGGGGCACATGGGAGGAAGAGGAATTGAGAAATGGAAAAGTAAGAAGAGGAGTGTGCGCTTAACCTTAAGAGGGTTGTTTATTCATTATAGCTGACCTCAAACACATTCTGTGTTTTGGCCTGCTCTTCTAGCTTGTTGGGAATTTACCCACTCAAAGCCACATTCTGTTAGAGCGTCAAATCacactgctgctgacaaacGAGGAAGAAATTGAAGCTCTTCTGACTACAATTTATAAAACTATCGCGATTTAAATCTGGTCATTTGGACTAAGTTCCCCCATTTCCCTTTGCTCTGCACAAACAAGAGCTAGGCACCCAGCTTTTCAGCATGCAGACACAATAGTGAGTGATTGTGATGCTTCCAGGCACAAAAGAGCTCTGGCTGGCCTAGTTTAGTAGCAACGAGCCCCGACAGGAtactaccacacacactcacttttgTTTCTGCCTCGTGCTCAAAAAGGAGactgtttaatatttttttcttttaattagattatcatttatatttgaaaaataccAGTTTAAAAAATACTATAAAATTGTGTGCGAGTCTTCCATGTGACAGATTAAACCTTAGAATTTACATCACTTTGGAATAGTTAATATTTTTGTGCAGTAAATGGTGGGTTACGTGGATTTCCCCTTCATTTCCTTGCTGATTACGCTGTGCTGCCTCCGCCTTTAATGTCCTCCTATAGGCACACACCAGAAAAATACCCCTCCCCCACACATAAGGCCTCACAGACTCCATTCAACTCCAACTTTTGTCTTGTTTACAAACAAAATGGTGAAATGTTGCTCAAGATTGGGTTCaacaaattcttaaaaaaaaaaaaaaaaaaaagaccataatTTAACACAGGCAATTGCATGGCCCCCTCCAATGAattgcagtttgtttttggtACTAAATGGTATTGTATTGTTCTTTTTGACCTTCTTTAAAAGAAGGTCGGTTATATCTGTATTATAGAAATGCTCCCATTTACTTCCAACAATGATAATATTACTGCTAGTAAGCGTTTTTTATCTTTGCTattaagtgcttttatttttgctAGTGAAAGCTATTATTCTTGCTAGTTTGTGCTTTTGATAGGGACTTTATACATTTAATAACAATCCGCAAAGTAAGATGTGTTTTTATACAAGTGAGGTCCTTATGTAGGCCATCTGCTTAGTAGATGAGTGAGGCAGATGTATAGTAGCTTTAGAGCTCTGTGGCTGGAATGTGTTTACACGAGGAAAAGAGACAATCCCCGACGCAGCACTGTAAAAACACTCAAAAGACTCGAAGTATGCAtgtaagtagtagtagtaataataataataataataataataataataataataataataataataataataataactccTTTATTAATTTTCCAGgggaaattaaaatgtgaagCTAAGAAGACGTTACGGCCGAATTTCCTGCAAAATAAATCGAGAAAGGGGGACTTGATTTCACTGTAAATAGTGAATGTGTTGTGTTAAAGCCATTCAAATTAATGAGAGAAAAGAACACAAAAACGAGTGTAACACGATCATTAACTTACTGTGATGTTTTTGTATTACAGATATTGTGTAAtaactatattaaaaaaaaccgTTATTTTATTTGTTCCAGTACTAGATTGATGGTTTGACATTGGACGTGTTTACATTATAAACCCATTTCGTCAAATGCATTACGTAATTGAGCAGCCTCACTGGGGGCTGTTTTGCTCAGTTCTCTGAGAGCTTTATCGACCGAGGCGCACTTCCTAGTTCGAGCCTCTTTCCATCCCCCtcctcttttttccccctccttcATAACAAAGTAACTAAGCCAACTGCCTCGTTTTGCATCTTTGAGGGTGAAAAAAATTCGATTGTATCAATTTAATCGTCGACAAACCGTCTTAATATCACTCGTTGTGTTTATACTTGGTCGTTTTTCCCTCTCCGACCTGCGCGAACAGTGGTGCGCGTTGGTAGTGCTGATAGTGATACTCGCGAGAACAAAGAAAGGCTTCTTCTCAATCATTCCTAACCCAATTAAAAGCCGAATTTAAGCATTTTAATGCtacaacaaaacataaactAAACGTGTGATGTTGTACTTTAAAATCAATTATTTAAAAGTGGTGATTTTTGTTTGGCTCGAAAGGATCATTTTCTGATTTCCTTACCTGACAAAATGTCCTGTAAGCTTTGGTTGAATGTTTGGACCTGTCGATCGTTTACGTGTCCTTTTACCCGCAGAAACCTCGACAGAAATCCGACGGCGGCGTTGATCTCTGGTTTCATCGTTCCCCGGGCACAAAGGGTATGCATTGAGAAAGGCAACGGCGACGATCCGTTCGCTTTTGCGGGTTTTCTCTACGTGTTTGTCCGATTGTTGGTCTTTCGCTCCACCTCTTCAGAGCTGCGATCCTTAACGTTATCTGCTGGCTCTCGTGTTGTTTTTCTTGGCATTTATTTGTCGAGGTAGAGGACAGATTTTCTCTGAGCGAGTCCGTGTGTTAGGACGGTACAGTGTTGGGAAACAGACGCCTGTTGTTGGTAAATACAGGGGAGGGGGGTTGGATCCCTTGGTGCCACGTAGACCAACCCGCCGAGCTCACTTTCCACCTCCAGAGTGAAGTTGTTGGAGTGGGGGAGCGGGTTTTTATAGCGCCCCCTCCCTCTTCACAGTGCCGACACAAGCTGCTACAGCAACAACAGCTCACCAATCGTGGTCCTGCCACCGTCTGACGAGCCACATATAGGAGGAGTGCAACATCCGCGTCACCGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638094.1 lncRNA upstream 71885 10761253 ~ 10770671 (+) True LOC120553079
TU308091 lncRNA upstream 133011 10705910 ~ 10709545 (+) True G227139
TU308058 lncRNA upstream 175276 10665709 ~ 10667280 (+) True G227116
TU308048 lncRNA upstream 212344 10628808 ~ 10630212 (+) True G227108
TU308047 lncRNA upstream 214574 10625446 ~ 10627982 (+) True G227107
TU308118 lncRNA downstream 20096 10872047 ~ 10872679 (+) True G227155
TU308115 lncRNA downstream 20149 10872100 ~ 10872679 (+) False G227155
XR_005638173.1 lncRNA downstream 62984 10914935 ~ 10927854 (+) True LOC120553495
TU308143 lncRNA downstream 83153 10935104 ~ 10935745 (+) True G227177
TU308163 lncRNA downstream 104533 10956484 ~ 10963552 (+) True G227184
XM_039791229.1 mRNA upstream 168505 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791219.1 mRNA upstream 183545 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA upstream 183545 10648321 ~ 10659011 (+) False scyl2
XM_039791221.1 mRNA upstream 198785 10638588 ~ 10643771 (+) True depdc4
XM_039792002.1 mRNA upstream 320319 10379970 ~ 10522237 (+) False anks1b
XM_039791053.1 mRNA downstream 96335 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA downstream 96335 10948286 ~ 10986201 (+) False impdh1b
XM_039791055.1 mRNA downstream 96336 10948287 ~ 10986201 (+) False impdh1b
XM_039791056.1 mRNA downstream 96336 10948287 ~ 10986201 (+) False impdh1b
XM_039791058.1 mRNA downstream 99312 10951263 ~ 10986201 (+) False impdh1b
TU308097 other upstream 105053 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 142838 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 647350 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 648040 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 650144 10192326 ~ 10192412 (+) True trnay-gua_57
XR_005638076.1 other downstream 96334 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 250885 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 250885 11102836 ~ 11112905 (+) False G227216
TU308276 other downstream 837218 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 1268921 12120872 ~ 12126545 (+) False st8sia1

Expression Profile