RNA id: TU308188


Basic Information

Item Value
RNA id TU308188
length 202
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G227204
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11011114 ~ 11011315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAAACAAAGTATCCACATGCTGCTGGGTTGTTAAGTATTTTGTAGTTCAGAGTCCCCCTGCCCACTGCCAAGAGTTGGTTCATTCCACTTCCTGTGGTGGAGTATAAAGGACAATTTCAAACTCCAGCTCTCCCTTTGGCAGATGGCTCAGCAACAGCAGCATGTGGAGAAACCAGAAAACAGGTACAAATCAACAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308164 lncRNA upstream 34800 10962969 ~ 10976314 (+) False G227184
XR_005638081.1 lncRNA upstream 42866 10967639 ~ 10968248 (+) True LOC120553015
TU308163 lncRNA upstream 47562 10956484 ~ 10963552 (+) True G227184
TU308143 lncRNA upstream 75369 10935104 ~ 10935745 (+) True G227177
XR_005638173.1 lncRNA upstream 83260 10914935 ~ 10927854 (+) True LOC120553495
TU308212 lncRNA downstream 32097 11043412 ~ 11054195 (+) True G227217
XR_005638092.1 lncRNA downstream 80875 11092190 ~ 11092674 (+) True LOC120553063
TU308210 lncRNA downstream 91521 11102836 ~ 11112905 (+) True G227216
TU308211 lncRNA downstream 91521 11102836 ~ 11112905 (+) False G227216
TU308216 lncRNA downstream 175624 11186939 ~ 11187782 (+) True G227221
XM_039791053.1 mRNA upstream 24913 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA upstream 24913 10948286 ~ 10986201 (+) False impdh1b
XM_039791055.1 mRNA upstream 24913 10948287 ~ 10986201 (+) False impdh1b
XM_039791056.1 mRNA upstream 24913 10948287 ~ 10986201 (+) False impdh1b
XM_039791058.1 mRNA upstream 24913 10951263 ~ 10986201 (+) False impdh1b
XM_039791047.1 mRNA downstream 7911 11019226 ~ 11023758 (+) True LOC120553009
XM_039791244.1 mRNA downstream 351448 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791007.1 mRNA downstream 442145 11453460 ~ 11456592 (+) True pax4
XM_039792456.1 mRNA downstream 800712 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA downstream 803798 11815113 ~ 11822653 (+) True LOC120553761
XR_005638076.1 other upstream 24913 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 273611 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 311396 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 815908 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 816598 10194430 ~ 10194516 (+) True trnay-gua_58
TU308205 other downstream 91521 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 91521 11102836 ~ 11112905 (+) False G227216
TU308276 other downstream 677854 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 1109557 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1994024 13005339 ~ 13020260 (+) False nrf1

Expression Profile