RNA id: TU308195


Basic Information

Item Value
RNA id TU308195
length 473
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G227211
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11023408 ~ 11023880 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGACCTTGCGAACAAACAAAATCCCACCATGCACGATTTAAATCCGATGTATGCAGTTTATAGACATTATGCTGAACTAAATAGAGCAAAGATTAAAAACAGAGGTTAGGAACAATGCAATTCACCATGAGCTTGAAAAGTTTTATTTCACATATTGTGCAAAAACCTCTGGTATCAAGGTGCAACAACAGCTCATGTGCAAAACAAGCATCACGTAATAAAGGCTCCACAGTAATTGATTACATAAGTGCATATCCCTTTAAATGTGACATTGGTTCAAATCAAAACAACAAAGTCAAACATGCtcaaagctatagtgcatagtttgtcgcccccatgaggaattctaagtaatgacaacaacactgtcggcgcatccacatgatacaagccttacgtgatcgcagacgtgcccccccccaccctcccacatgcagttgctagtagcgaTGGAGTAATTTTCTTCACTTG

Function

GO:

id name namespace
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638079.1 lncRNA downstream 48075 10960360 ~ 10975333 (-) True LOC120553014
XR_005638080.1 lncRNA downstream 60968 10960360 ~ 10962440 (-) False LOC120553014
XR_005638078.1 lncRNA downstream 60968 10960360 ~ 10962440 (-) False LOC120553014
TU308171 lncRNA downstream 74244 10948658 ~ 10949164 (-) True G227190
XR_005638209.1 lncRNA downstream 80583 10940592 ~ 10942825 (-) False LOC120553801
TU308202 lncRNA upstream 5964 11029844 ~ 11031005 (-) True G227215
TU308213 lncRNA upstream 67510 11091390 ~ 11091617 (-) True G227218
TU308217 lncRNA upstream 228744 11252624 ~ 11252855 (-) True G227222
TU308245 lncRNA upstream 243706 11267586 ~ 11267789 (-) True G227248
TU308286 lncRNA upstream 434917 11458797 ~ 11460023 (-) False hgfa
XM_039791052.1 mRNA downstream 13303 10987010 ~ 11010105 (-) False LOC120553011
XM_039791050.1 mRNA downstream 13303 10987010 ~ 11010105 (-) True LOC120553011
XM_039791051.1 mRNA downstream 13307 10987010 ~ 11010101 (-) False LOC120553011
XM_039791981.1 mRNA downstream 90765 10916702 ~ 10932643 (-) True si:dkey-159a18.1
XM_039791987.1 mRNA downstream 106835 10910337 ~ 10916573 (-) False fam3c
XM_039791245.1 mRNA upstream 246114 11269994 ~ 11448442 (-) True snd1
XM_039792505.1 mRNA upstream 434701 11458581 ~ 11482578 (-) False hgfa
XM_039792504.1 mRNA upstream 434701 11458581 ~ 11482578 (-) True hgfa
XM_039791758.1 mRNA upstream 479738 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791755.1 mRNA upstream 479738 11503618 ~ 11604688 (-) False cacna2d1a
TU308180 other downstream 42149 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 500446 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 826975 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 827538 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2268576 8572959 ~ 8754832 (-) False ppfia2
XR_005638189.1 other upstream 600129 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 815064 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 1261046 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2496385 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 2627782 13651662 ~ 13659272 (-) True LOC120553486

Expression Profile