RNA id: TU308210


Basic Information

Item Value
RNA id TU308210
length 1266
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id G227216
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11102836 ~ 11112905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGTACTGCCTTAGGACTCAGAGCCCCGCTGGTTTTAATTCCAGCAGGATGAAATCTAATGTAATCAGGATTTGTTTTACACCTGGGGTTCCAGGTGAATGCAATTAAGTGCGATTAACTGTGCCATTTCACAGTTGTCACATGGATGATACTGCATAGTTTTCTCCTCAGTTGAGGCTGCAAATGTTATCACTTTTAgaaggaaggagaaaaaaaaagctacatGTTCAGTTGgGCTCTGATTGCACACTACTCTGGCATGTTATTGTCCCATTCAAGACCCAAGCCCTGaGCCCTTGAAGAGAGAGTTGCGTCATCTCCGTTCACTTCATcgggcaagttttttttttagttttttttttttacagcaatggCGGCTCATGGAGACCCCCAACAGTTCCACACAACATGAGCTACCACCCGTGTCGCCATAGAGAAGCATTGTTTAATCAGCTCCTTACTGAGCAGGTCAGACTCTACAGAGTGCAACCCAGGGACCTTCCTCATCCAGGCCCAAACTGTCAATGCTACTGGGCAGATCCAGTGGCAGACCTTCCAGGTCCAGGCAAACCAGTTGCCCCAGGGGGCAGGCCCAGGCCCAGCAGCTGATCTTAACCCTGATCTATACCCTCCCTCTGAGCCAGACAAGCCAGATCAGCCTGCCCAACCTCCAAACAATCACGGTGAAATCTGTAGCACAAGATGGAGTTCAGTACACACAGGGGTAGGACGCAAACTGTCCAATTGGCATCTAGATAATGGAGGAGCCAGACTCTAAGGAGTGGCTGCTGAGCGGAAACGCAATGAGAGATGAGGAAATCGACACGGCGGGCGGGGAGAGCAGGAGGCTCCGCAGAGTAGCCTGCACCTTAACACATGcttaattgcatttttaatcTATTCAGACTTGTAAAATTATTCATTCAAGTCCTGTTAATGGTTTCGCTTAAACTGGGTTAGTTGACAAACTGCGCCTGGGTTTCAAATGGCATTAAGTTGAATATATGATTTTAACACCCAAGTAAGTGCATTTCACTATGTACTCATTCAGTGTGTGCATTGATGCAACTAAAATTATTGTACTTGCTTttgttattgtcattttattgtatatttatatattatagcCTTTGTGTgtgcaataatacaataaaggtATACTTAATTAAGAACAGCcatttactgtacatacattGGTGACATTTGTCTCTGCTTTTAAACCATaataaactatttttttaaataactaaattACTGAAATGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638092.1 lncRNA upstream 10162 11092190 ~ 11092674 (+) True LOC120553063
TU308212 lncRNA upstream 48641 11043412 ~ 11054195 (+) True G227217
TU308188 lncRNA upstream 91521 11011114 ~ 11011315 (+) True G227204
TU308164 lncRNA upstream 126522 10962969 ~ 10976314 (+) False G227184
XR_005638081.1 lncRNA upstream 134588 10967639 ~ 10968248 (+) True LOC120553015
TU308216 lncRNA downstream 74034 11186939 ~ 11187782 (+) True G227221
TU308248 lncRNA downstream 347208 11460113 ~ 11460500 (+) True G227251
TU308264 lncRNA downstream 511330 11624235 ~ 11627943 (+) True G227267
TU308377 lncRNA downstream 877195 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 1130629 12243534 ~ 12243755 (+) True G227363
XM_039791047.1 mRNA upstream 79078 11019226 ~ 11023758 (+) True LOC120553009
XM_039791062.1 mRNA upstream 116635 10951264 ~ 10986201 (+) False impdh1b
XM_039791244.1 mRNA downstream 249858 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791007.1 mRNA downstream 340555 11453460 ~ 11456592 (+) True pax4
XM_039792456.1 mRNA downstream 699122 11812027 ~ 11822653 (+) True LOC120553760
XM_039792457.1 mRNA downstream 702208 11815113 ~ 11822653 (+) True LOC120553761
XM_039791458.1 mRNA downstream 713404 11826309 ~ 11836976 (+) True LOC120553244
XR_005638076.1 other upstream 116635 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 365333 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 403118 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 907630 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 908320 10194430 ~ 10194516 (+) True trnay-gua_58
TU308276 other downstream 576264 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 1007967 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1892434 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 2362240 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 2561919 13674824 ~ 13685881 (+) False LOC120553473

Expression Profile