RNA id: XM_039792504.1


Basic Information

Item Value
RNA id XM_039792504.1
length 5116
RNA type mRNA
GC content 0.41
exon number 18
gene id hgfa
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11458581 ~ 11482578 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGTATAAGGGGGTTGAACCGAGGACGTGTGGTTTCTTGGAAAAGTGGCATCTGTGTGAGGAAGGCAAGTCTTTAGCTGGTCATCAGCCACTCTGGACTTTATACAACCACTGAGTCTGTCGCTCAATTAATCTGGATTCTAAAAACCTGCTTTCAAGTTCCTAACCATGAGGACAAACGTATGGATTTACCAagctgtggtgtgtgttgtggtcaCTGTATTGGGCACAGGTTTTTGTAGGAGGACTCATCAGTCATTACAGAAGTATGAGAAGACTGAGAATCACCTGCTGGTTTGTACAGAATGCCCTCAGCCCCCTTTGGTACGGAACAGCCGATCGCAGGAACACTGCGCACACAAGTGCAAGAAGGTCAAGAAAAACTTCAACTGCAGGGCTTTCAACTTTCAGCGGCACAACAGGAAATGCCACTTGCTTCCTTTTGACCGCTTCACCCATGGTGTGCAGAAGCAGGCCAATGTCAACTTTACTTTGtatgaaaaaaaagATTATATAAGGGAGTGTATCATCGGCACCAAGGACAACTACAGAGGGAGGAGGTCTTGGACAAAGTCAAACATCACTTGCCAAGCTTGGTCAGATAATAACATCAATGAACACACGTTTTATCCTGATAGGTACCCAACACAAGACCTGAGGGAAAACTTCTGTCGGAATCCCAACAACGATCCTGGTGGTCCGTGGTGCTACACCACAGACCCCAACGTACGAGCCGAGGAGTGTGGCATACCACAGTGTTCAGAGGAAGTCTGTATGACGTGTAATGGGGAAGATTACCGGGGCAAAATGGACCATACGGAGAGGGGCAAGGAGTGCCAGAGATGGGACTCAGCAAGGCCTCACAAACACCACTTCCAGCCCAAAAAgTATCGGCAAAAAGATTTAAAGGACAATTACTGTCGTAACCCGGATAATCGTCTTCGCCCCTGGTGCTACACCATGGATCCAAAAACTCCGTGGGAGTACTGCAACATTACTGTGTGTGATTCTGACTCGAGTGAGGACACAGATGTCAATGTAACAACATCCTGTGTCCAGGGAAAAGGCACAGATTACCGAGGCACAATGAATGTCACTCCGGAGGGTGTGACATGTCAGCGCTGGGACTCACAGTTGCCCCATAACCACTCCTTTCTTCCTCAGAACTTCAAATGCAAtttgtgtatgtgttttagaGATCTCAGCGAGAACTACTGCCGTAACCCTGATGGTGCAGATTACCCATGGTGCTTCACTACAGACCCTAATCAGAGGATAGCCAACTGCACCAACATCCCCAGGTGTGATGCTGAGGCCACACAAAAAATAGAATGTTATGAAGACAACGGAGAGACGTACAGGGGCACTTTATCCATAACTCGATCGGGGATTCCCTGTGCAGACTGGTCGCATCACATAAACAGTGGGGATTCTCACTCTACAGAATCCCATGTAGGGCTGGAGAAGAACTACTGCCGGAACCCGGACCGGGACAAACATGGCCCCTGGTGTTACACCAATCCAAATAACCGTTTGGCCTGGGACTACTGCAAACTGCGGCACTGTGAATCAGCTGCAGTGGCTCCTCAACCGATCACTTTAACTGGGCCCACGATATCATGCTTTGTGCATATAAGCACAAGAATTGTTGGAGGACACCAAGTGCAAGGAACAGATGGCAGCTGGGTTGTGAGCATCCAAAGAGAGAAGGTTCATTTGTGTGGGGGCTCATTAATCAGAGAAGATTGGGTTTTGACAGACCAACAGTGCTTCACCTCCTGTGTTCCAGATCTCAAGGATTACAGTGTGCAGGTTGGTCTGCGCCACCTCAATGAATCCTCAAGCCACCCGAGACTACGCATCTCTCGCCTGATATGTGGCCCAGAAGGATCCAATTTGGTTATGCTGAAACTAGAAGATCCAGCCCCTGTGTCTGAAGGTGCCTCCACTATTCATCTTCCAGTAAAAGAGTGTCACATCACCGAAGGCACCAACTGCACCATGTATGGATGGGGGGAAACTAAAAACACAGGATACGATGATGCACTGAACGCTTTGACCATGCCCATGGTCAACAATGACATGTGCTCACAAATTAAAGGGGATGCTGGGGAAAGTAGAATATGTGCCGGTGGCAAGAGAGGAGAAGGCGTATGTGATAAAGACAATGGCGGCCCATTGGTTTGCCAGGAACATGAACGCAAAGTCATCATTGGCGTGAGCATCCAAAGGACAAAATGCGCCTCATCGCAGCCTGCACTTTTTGTTAACGTTGCTTTCTACTCTGAGTGGATATACAAAGTGTTCAAACTTTACCCTAGTTTGGAGAGAAACTGATTGTGTGGTGTGAAAATCAACCCCATGCATGACTTTACCACAGCCTGCAAGAGGAGGGCGACGGCTTTGGGCCAACAAATTCCAAGACCGCTCCAGCATGGACCACAGGGGATACATTAAGAAAATCACCTAACGGAAAGTGCCCATTTGGGGATTTTGTGGCTGAATTTGTCATTTTATGGAGATGACAGATTAGTAATTGAAGACTGGATAAACCGATTGGAATCTCATCCGTTCTTCCACTTTGCAAATGAAGACATCCCGGTTTTTtaccttaaaataattttttacaaCCAAAGTCTCTGGCACATTGACAGCATACTAATTGTATTTTGACATGTTCAGAATTTCTGAAGCCATGCAAACAAAGACAATGAGAAAGACTCAGTATTATCTCCTGGAATATACTTGAATATGGACAAAACCCAGTTATCTGGAGGTTACCACATGAGGTACCCTCCTGTGACTGGGACTTTTTTAATGTGTTGAGCGGGACTGCAAAACATATCTTATTACTTCCAACACATTTGATGCAGATGGATAATTGTGGTGTTCTTTAATGTCAACAAATATACTAATCTGATCATACATTTAAGGATACCTTACAAATATCACAGCGGAAATGATAAGTATTAATTCACCTTCTGATATAATCCAACAAAGAACTATGGTGATACCAAAAAGGGAGGAAAATATAAGCATGAAAAGGTATCTATTAGGTAGTATAGACACTTAATGTTCCAATGAAAAAATTGTGATCAAGTCAAGCCTCTAATCGAGCAAAGGTCAATATTTGGCTTCAGATATACCAGTAGTTAAGTATATAAAATACACTATTGCTGCTTGAAAAGCGAACTGCAGCAGCCTTGGCAAACCATGCAGTGCTAATTGTGTGCAGTAGCTAGACTACCTTTTCCCCAGTTAGCTGTAACTGTTAGAGTCCCCGTGAGAGGGTCTAAGTAGGACTGAGCAAACTGCTCCAAAATCTTATGCTAATATTTGTAgcatgagagagagaagagtcaTGCCAAATATAACATGGCTATTTGGTCTCCAGTTTGGAGGGAACTTTGGCCCCTGGTGGGCTGTGTGTGGTCAGTAGgatattttatacttttttgttTCATGGAAATAGACTCCTTATGTACATAAGTGCAGATTTATTGAGTATGGTTCTGCTGTGCTGTAAGATATTATAGGTCTTATAGATCTGGAATATTTTTGGTTCACTGagtaataatgtaatgttatgGCTTCTTCGTGCCTCTGATTATGTTCGATATTTAAAGAGACTGGTAGCTTGTAAGTAGTAGTtaggtatatttatttttttaaattagcagAAGACACGGTTTGAAAAGAGTCCAGATTTTGGTGTGATATTTAGaatttgtgtttctgttctgAGAGTAATTAGAAATAACAAGAAgactgcatgcatgtatgttgtatgttgtatgtttgaCTCACAGGTAGTAGCCACACAAACATGAAATAATATGCTAGGTTACAGTTTGCCTCATTTGGTTTAACCTTCAAATTTAGGAGCGCTTGTTGCGGGCTAAATAAGTATTGTTCTGCCCAGACTTTAACATGCGCATACtgcatatacacaaacacaaaaacttgTCACAAATGTGCGATACTTTTATCATTATGATGTACTTCCACGTTAAaggcatgaaaaaaaaatatgggcTTTAGattaaaatacaagaacattttatttacaaaaataaaacaaaaaacggaaacCTCTTACACCAAGTTTCTTGCATTTAAGATGAAGCCAAATAAGTGAATCAATACAGGAGATAGGAAAGGAGTACATTATCACTGGCTACATGGCTACCCAAATGACCACTTGCTTATGATTTTATTTGTGTGATGTTTGATAGAAGTCAGATCAACTTGTGCTGATGAGGGTATTTACTCAATCAGTTGGACTAGAAAAAGGTAGTTTTTCTTACAAATGTCTCTGTCTGCAACCATTTCTGAATTAGCTAAAGTTTGCAAATAGCCAGATGATGCCTGTAGCCCTAAATGCCCTCAATGATGCCCAAATGGCCCTATGATTCCCCAATCATTAAGCATTAAACGAAGTGTATTTTACTCATATTTGTGTGGCTCCTATGGAAAAGTTTAACAATGTATTCTATTCTCAGCTCTGAGATGACTGTTCTGAATATCACATGGAAAACGGTACATAGCAACAAATGAACAAACATTAATATTAGGGGCTTTCCCATCAGCCGTTGAGTAATTGCCGTTGCGGTTGGTTTCAAAGACCGTGACTGTATACATTTAAATTATAACTGTGGCCTTGAGGACAAATTCAATCCTCTTATAGCCTTGCACAGGTTAAAACCAAGGTGAAAGTCTATGAAGTAGCAATTTAAACTAAGAAAGCGTCATAAAAGGCAACTGACATATAAGATAAgtgaaatcaaatatcacataTTCTTGGTTAATGTGGAGGATCAAATAATTGTGTCATAAATTGTCAGCTGTGCTCTCACGGCGTTGTAACTGTTATTTAATTTACCTTAATGTAAATAGCCCGGAGCATTCTGTACATGACACTTTGTAATTTTTGTAAATATTATACTTAAGTATTTTTACTACGTGATCAATCTGTTAATATGTTTGTACACTATAAACTTTAAATATAACAGCTGCTATTTTGTGTTAGTGAGTTGTTTTTATAGCTATGGCCTTTTCTGAATTTTCTAGCCTTTgtattattcttattttaataaacaatttgACATTGCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308245 lncRNA downstream 190792 11267586 ~ 11267789 (-) True G227248
TU308217 lncRNA downstream 205726 11252624 ~ 11252855 (-) True G227222
TU308213 lncRNA downstream 366964 11091390 ~ 11091617 (-) True G227218
TU308202 lncRNA downstream 427576 11029844 ~ 11031005 (-) True G227215
TU308195 lncRNA downstream 434701 11023408 ~ 11023880 (-) True G227211
TU308317 lncRNA upstream 16266 11498844 ~ 11500914 (-) True G227295
TU308338 lncRNA upstream 329905 11812483 ~ 11822704 (-) True G227314
TU308429 lncRNA upstream 348451 11831029 ~ 11831677 (-) True G227384
XR_005638138.1 lncRNA upstream 413065 11895643 ~ 11906818 (-) True LOC120553249
TU308452 lncRNA upstream 413068 11895646 ~ 11906820 (-) False LOC120553249
XM_039791245.1 mRNA downstream 10139 11269994 ~ 11448442 (-) True snd1
XM_039791052.1 mRNA downstream 448476 10987010 ~ 11010105 (-) False LOC120553011
XM_039791050.1 mRNA downstream 448476 10987010 ~ 11010105 (-) True LOC120553011
XM_039791051.1 mRNA downstream 448480 10987010 ~ 11010101 (-) False LOC120553011
XM_039791981.1 mRNA downstream 525938 10916702 ~ 10932643 (-) True si:dkey-159a18.1
XM_039791758.1 mRNA upstream 21040 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791755.1 mRNA upstream 21040 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791757.1 mRNA upstream 21040 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791756.1 mRNA upstream 21040 11503618 ~ 11604688 (-) False cacna2d1a
XM_039791752.1 mRNA upstream 21040 11503618 ~ 11604688 (-) True cacna2d1a
TU308180 other downstream 477322 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 935619 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1262148 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 1262711 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2703749 8572959 ~ 8754832 (-) False ppfia2
XR_005638189.1 other upstream 141431 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 356366 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 802348 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2037687 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 2169084 13651662 ~ 13659272 (-) True LOC120553486

Expression Profile