RNA id: TU308338


Basic Information

Item Value
RNA id TU308338
length 2199
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G227314
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11812483 ~ 11822704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTAATATTGTTTGTGATAGAGCTTCCAGGGTAGAAATGACACAAGCAAATCAGTCTTAATGTGCAGTTTATTTACACAAACTTGTCAAATGCACAAAGCCACTGCAAATTACAAGAACAAAGCAAAATGAAGACTGCGTACACACTGGTCTTCCCAGTACTGTCCCTTTCTGTAATTTTCCATCTGATAAATCGTAGTCAGGGTAGTGGCTATAAACAGTATGGCTGGATTCAAAGGGCCAAGGAGATCTGTGTGATGTGATTTTGCAGGAAAATCACAATTTAACAATCACTGACAGCATGCTTTGTTTTGTCTTATTAAAGTAACATTAAATTATATCCCCATTATACTACAAGATCTGACAACATTACTGTGTAACATTAGAATCAGTAgtttacatttacacatttacagtaaagtAGAACCTGTAGATAAAGAGATCAGTAGATTACCAATATAACATTTAGTTTTCACTAAACCCGttttctgaaacggacccctgtTAAGTGTGTAAAAAGAGACCAATGTTCATTTTTCCGTGGTTTTTAAAGAAAGAACAAACTCAGTGTGTTTGAGGAACAGGGGTTATGATGATCGGGGCAGAGTTTGTTCCATTTGTGTTGCCTTGAGTGCAGAAGTATGGATACAGTTTCTCTGTAAAGTGGCAGCCAGTGAAATAATAGATATTTGATTTAGAATTCACATCGTAGAACGAAACCACTCCCTTAATATAGTCCACAAAGACGCCCACCTTCTCAAGCTTTTCTTTTAGTGTGATTTTAACACTTGGTTTTGTGTATGCATAATATATACTGTCATCAAGCCCAATGGTCCAGTAACCATTTTTAACTGACACAGCTATGTTCTCCTTTCTATCAACAGACTCTTTGACCACTCCAAGAATCCAGTCAGTTTTTCCTTTCACTTGCACTTCATAGTAAAACTTCCCTGTTGTGAATCCCTCCTTTGCCAAAACATCTGGATACACTTTAAATCTCTTTGGGCTGTCGGGAAGATTCTGTTCCGTGTCTACATCTTTCACCTGTTTTCCATCCTGGCTTATGACAAGTGAGCAAAATGCTGTgtcagggtcaaaggtcaagtcCACTGCATGTTctctcatttttttcattttgatctcAGGAAGCTCTTCCATTATTTCATCAACTTTCTGTTTCAGCTGCGTCACAGCTCCTCTCACTGCCTTGAAAGACAGATCGCTGTGAACACCAATCTTGGCCCAGTCCTTGTTTAAAGGGGAGCACAAGGTTGGGAAGCTCTGGAGAAAATGGTGGTGATCCTCAGAACGTGACAGCTGCTCCAGCTGGGTGCTTCTGCTCTCGAGCTCAGCGATCTCCATCCTCAGTTCTGTGAGAAAACCTTCAGCCTTTTGCTTTGTTGCTCTGTACCTCTCCTCAATCACCTCAGCAAGCTCGGCCTGGCTTCTCTGGAGGGAGCGGATCAAGTCAGTGAAGACCTGCTCActggtttctttctctttctcagctTCTCTTTGGCTGACGTCAACAGAGTTTTCAATCTCAGCTATTTTCTTGGACCGTGATTGTATGGTCTGTTGGATATTTGCCATGGTCTCATCTTTTCTTGCCATCATTGCTTCATATTCTTCCTCAAGTGGGACAACGTTGTGACTCTTGTGATCGGTTTTGAAACacgagacacagatacaggccTGCTCAGTCCTGCAGTACAGTTCTGTTGTCTTGTTGTGCGTCTTGCACATTCTGTCATCAAGATTCTTCACAGGGTCTAATAATGTGTGGCCCTTGAGAGCAGCAACTCTATGATGTGGCTCAAGGTGCATTTCACAGAAAGACACTAGACACGTCTGGCAAGATTTAACAGCATTTAGCTTCATCTCAGAGCAGATGTCACAAAGAACGTCTGCTGATCCAGGGAGATGTGGGTCTGGAGTTGAGGCTTTGATTCGAACTAATGTCTTAAACTCAGCAGCTAACTCAGACATGACAGTGTTGACTTGGAGTTCAGGTCTTGGAGAAAATGGCGTTTTGCATAAAGGACACTGGTAAATGTCACACCCGTCCCAATACGTATGAATACATGCACTACAGAAATTGTGTCCACAGGGCGTTGAGACTGGCtcagtgaacacatccagacagacagaacacagGAACTTCTCCTCTGACAGCAGACAGCTGGCAGTCGCCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308317 lncRNA downstream 311569 11498844 ~ 11500914 (-) True G227295
TU308286 lncRNA downstream 352460 11458797 ~ 11460023 (-) False hgfa
TU308245 lncRNA downstream 544694 11267586 ~ 11267789 (-) True G227248
TU308217 lncRNA downstream 559628 11252624 ~ 11252855 (-) True G227222
TU308213 lncRNA downstream 720866 11091390 ~ 11091617 (-) True G227218
TU308429 lncRNA upstream 8325 11831029 ~ 11831677 (-) True G227384
XR_005638138.1 lncRNA upstream 72939 11895643 ~ 11906818 (-) True LOC120553249
TU308452 lncRNA upstream 72942 11895646 ~ 11906820 (-) False LOC120553249
TU308456 lncRNA upstream 72942 11895646 ~ 11906820 (-) False LOC120553249
TU308458 lncRNA upstream 83544 11906248 ~ 11906820 (-) False LOC120553249
XM_039792254.1 mRNA downstream 4816 11789195 ~ 11807667 (-) False tspan11
XM_039792252.1 mRNA downstream 4816 11789195 ~ 11807667 (-) True tspan11
XM_039792253.1 mRNA downstream 4816 11790610 ~ 11807667 (-) False tspan11
XM_039792195.1 mRNA downstream 89548 11689127 ~ 11722935 (-) True LOC120553596
XM_039792190.1 mRNA downstream 135651 11625548 ~ 11676832 (-) False pcloa
XM_039791451.1 mRNA upstream 14544 11837248 ~ 11848941 (-) False cracr2ab
XM_039791452.1 mRNA upstream 14544 11837248 ~ 11848941 (-) False cracr2ab
XM_039791450.1 mRNA upstream 14544 11837248 ~ 11848941 (-) True cracr2ab
XM_039791453.1 mRNA upstream 15737 11838441 ~ 11848941 (-) False cracr2ab
XM_039791468.1 mRNA upstream 26360 11849064 ~ 11852302 (-) True ccdc59
XR_005638189.1 other downstream 135651 11624009 ~ 11676832 (-) False pcloa
TU308180 other downstream 831224 10980198 ~ 10981259 (-) True G227197
TU308019 other downstream 1289521 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 1616050 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 1616613 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638137.1 other upstream 16240 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 462222 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 1697561 13520265 ~ 13529778 (-) False LOC120553470
TU308919 other upstream 1828958 13651662 ~ 13659272 (-) True LOC120553486
unassigned_transcript_1491 other upstream 1986903 13809607 ~ 13809679 (-) True trnak-cuu_13

Expression Profile