RNA id: TU308615


Basic Information

Item Value
RNA id TU308615
length 466
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G227510
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13071545 ~ 13075348 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCAAAGTCTAAAGTTGGTTGTAGTGATGCACAAAGGAAAGCCTGGCAACTGGAGCACTTGAGCATATCGCAGCCAACGTTGATCCAGCCATATCTGGCACACATCAGAGGGGACAGTGTGCGGGGTTTCCCTGCCCATTTCAAACATGAATAGGATTCCACTCTTGAGAAAAAGGCTTCTTTGTTTGTTGCTTCGCAGGGTGCTTGAGTGTTGCTTTTTACTTCCAGAACTTTCACATTTCCTTGTCCACTGTTGGATCCGATATCTGTTGATGACACTCCTGCATTAAGAAGTTCACGAACTTTCTCTGGAGATGCAAAAGAAGACTTTTGTTGATTAGTGTTGCCGAGACGATCCCCACGACTGCCGCCGAGAGTCGCCATGATCGGCTCTGTGTTCCCCCggaaaataaaacctgaaaccAATCGTTCCGCTTTACCCCAACCACAGCACCCTACAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308594 lncRNA upstream 28527 12987713 ~ 13043018 (+) True G227499
TU308581 lncRNA upstream 161405 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 827790 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 1078593 11990100 ~ 11992952 (+) True G227338
TU308264 lncRNA upstream 1443602 11624235 ~ 11627943 (+) True G227267
TU308813 lncRNA downstream 418053 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 441134 13516482 ~ 13531547 (+) True G227646
TU308840 lncRNA downstream 478902 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 881349 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 892195 13967543 ~ 13969687 (+) True G227736
XM_039791209.1 mRNA upstream 48598 13005339 ~ 13022947 (+) True nrf1
XM_039791211.1 mRNA upstream 48598 13005339 ~ 13022947 (+) False nrf1
XM_039791210.1 mRNA upstream 48598 13005339 ~ 13022947 (+) False nrf1
XM_039791212.1 mRNA upstream 55419 13005339 ~ 13016126 (+) False nrf1
XM_039791208.1 mRNA upstream 161356 12659268 ~ 12910189 (+) False plxna4
XM_039792307.1 mRNA downstream 1809 13077157 ~ 13082244 (+) True klhdc10
XM_039792308.1 mRNA downstream 1809 13077157 ~ 13080889 (+) False klhdc10
XM_039792309.1 mRNA downstream 1809 13077157 ~ 13080664 (+) False klhdc10
XM_039791505.1 mRNA downstream 46164 13121512 ~ 13125815 (+) True LOC120553267
XM_039791506.1 mRNA downstream 46164 13121512 ~ 13125815 (+) False LOC120553267
XR_005638103.1 other upstream 51285 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 945000 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1314228 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 1958640 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 1958640 11102836 ~ 11112905 (+) False G227216
TU308693 other downstream 399797 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 599476 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 693707 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 694718 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 699639 13774987 ~ 13775059 (+) True trnak-cuu_12

Expression Profile