Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00072859 |
| length | 1338 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 9 |
| gene id | XLOC_037009 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 13733468 ~ 13799692 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008154 | actin polymerization or depolymerization | biological_process |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0017124 | SH3 domain binding | molecular_function |
| GO:0030296 | protein tyrosine kinase activator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060929-192 | Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI2 (abl interactor 2). |
| ensembl_id | ENSDART00000138254 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075074 | lncRNA | upstream | 262065 | 13469074 ~ 13471527 (+) | True | XLOC_037005 |
| TCONS_00072842 | lncRNA | upstream | 494563 | 13235020 ~ 13239029 (+) | False | XLOC_037003 |
| TCONS_00072841 | lncRNA | upstream | 499448 | 13233575 ~ 13234144 (+) | False | XLOC_037003 |
| TCONS_00072835 | lncRNA | upstream | 643729 | 13076852 ~ 13089863 (+) | True | XLOC_037001 |
| TCONS_00072832 | lncRNA | upstream | 789837 | 12943279 ~ 12943755 (+) | False | XLOC_037000 |
| TCONS_00075075 | lncRNA | downstream | 313099 | 14112475 ~ 14117000 (+) | True | XLOC_037014 |
| TCONS_00072873 | lncRNA | downstream | 352792 | 14152168 ~ 14197503 (+) | True | XLOC_037016 |
| TCONS_00075076 | lncRNA | downstream | 1718157 | 15517533 ~ 15530690 (+) | True | XLOC_037018 |
| TCONS_00074887 | lncRNA | downstream | 1728235 | 15527611 ~ 15529457 (+) | True | XLOC_037019 |
| TCONS_00075077 | lncRNA | downstream | 1768200 | 15567576 ~ 15571007 (+) | True | XLOC_037020 |
| TCONS_00072852 | mRNA | upstream | 4655 | 13714379 ~ 13728937 (+) | False | XLOC_037008 |
| TCONS_00072853 | mRNA | upstream | 10987 | 13714411 ~ 13722605 (+) | False | XLOC_037008 |
| TCONS_00072849 | mRNA | upstream | 21601 | 13682133 ~ 13711991 (+) | False | XLOC_037007 |
| TCONS_00072851 | mRNA | upstream | 21601 | 13707933 ~ 13711991 (+) | True | XLOC_037007 |
| TCONS_00072850 | mRNA | upstream | 28573 | 13685921 ~ 13705019 (+) | False | XLOC_037007 |
| TCONS_00072862 | mRNA | downstream | 186191 | 13985567 ~ 13989879 (+) | False | XLOC_037010 |
| TCONS_00072863 | mRNA | downstream | 187051 | 13986427 ~ 13989059 (+) | True | XLOC_037010 |
| TCONS_00072864 | mRNA | downstream | 200244 | 13999620 ~ 14005116 (+) | False | XLOC_037011 |
| TCONS_00072866 | mRNA | downstream | 211447 | 14010823 ~ 14019390 (+) | False | XLOC_037012 |
| TCONS_00072868 | mRNA | downstream | 224010 | 14023386 ~ 14028002 (+) | False | XLOC_037013 |
| TCONS_00072854 | other | upstream | 4656 | 13714411 ~ 13728936 (+) | True | XLOC_037008 |
| TCONS_00072844 | other | upstream | 284944 | 13448529 ~ 13448648 (+) | True | XLOC_037004 |
| TCONS_00072843 | other | upstream | 487066 | 13238817 ~ 13246526 (+) | True | XLOC_037003 |
| TCONS_00072822 | other | upstream | 905472 | 12828005 ~ 12828120 (+) | True | XLOC_036996 |
| TCONS_00072821 | other | upstream | 1278649 | 12444524 ~ 12454943 (+) | True | XLOC_036994 |
| TCONS_00072865 | other | downstream | 200427 | 13999803 ~ 14003253 (+) | True | XLOC_037011 |
| TCONS_00072867 | other | downstream | 211498 | 14010874 ~ 14014330 (+) | True | XLOC_037012 |
| TCONS_00072872 | other | downstream | 343697 | 14143073 ~ 14147153 (+) | True | XLOC_037015 |
| TCONS_00072875 | other | downstream | 1767988 | 15567364 ~ 15571007 (+) | False | XLOC_037020 |
| TCONS_00072881 | other | downstream | 2107657 | 15907033 ~ 15907820 (+) | True | XLOC_037024 |
