RNA id: TU308823


Basic Information

Item Value
RNA id TU308823
length 806
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G227646
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13516482 ~ 13531547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATTTAAAGTCCAGTCACTGCAATGCatttaaacaacttttatttattaagttttTACAAATAAAGTAACAAATGTCATTGTATTGTAGCGCAAAGCgcaaagttttctttttaatatgaaGCTTGAACACTCTATACTTAGTGCAAAACATACCGTTAAAGGCTGCCGATGACTCCCTacatgtattgtttttgttttttcttttattcattcattcatgtttttttttttatccaaccACTTACAATGTCAAACATGATACAGAAAAATGAAACCACTGAATTAAGTTAGGTGCAGCTAGAGACATCAAAACTGCTGATAAAACAAGTGAGGAAtaatcccaaaaaaaaagaaaaaaaaagaagaaaaaaaatcagagaAACCAGAAACATTTGACATATTGAGAAAAATGTTTTCAGGGAAACTGTTGCTGTGCTTGAGACTCGACATCATTCCACAGGAGCAAGCTACATAGAACAGCAAGGAGATGCACTGAATCAatctctatctatctgtgtgtgtgtgtgtgtgtgtgTCTCTAAGgtggctgacttcctgtttgaAGTCTTCATCCTCAAATTCAGAGTCGTTGTCACTGCTGATGTAGGAGTTATTGAAGGAGTTGGTGTTTAGATTGGGCAGAGAGGCTTTATGAGTAGAGTCTGGACTCAAAAGCTGCCCATGATTACTGGGTCCGTTAGCAGCATGGGCAGCAGGCAGAGGGGTCTGCCTGGATTCGAGGCTGTGCTCCAGGGTACGACTGACTGAGAATCTACCAACACGGGCCTCTGGGTTGATGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308813 lncRNA upstream 22621 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 441134 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 473464 12987713 ~ 13043018 (+) True G227499
TU308581 lncRNA upstream 606342 12846814 ~ 12910140 (+) False plxna4
TU308405 lncRNA upstream 1272727 12243534 ~ 12243755 (+) True G227363
TU308840 lncRNA downstream 22703 13554250 ~ 13554826 (+) True G227662
TU308978 lncRNA downstream 425150 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 435996 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 484551 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 500848 14032395 ~ 14046985 (+) True G227742
XM_039791770.1 mRNA upstream 26063 13479727 ~ 13490419 (+) False napepld
XM_039791771.1 mRNA upstream 26063 13480265 ~ 13490419 (+) False napepld
XM_039791772.1 mRNA upstream 26063 13480884 ~ 13490419 (+) True napepld
XM_039791773.1 mRNA upstream 26063 13480903 ~ 13490419 (+) False napepld
XM_039791767.1 mRNA upstream 37367 13474549 ~ 13479115 (+) True yeats4
XM_039791943.1 mRNA downstream 99404 13630951 ~ 13657762 (+) True LOC120553484
XM_039791945.1 mRNA downstream 99404 13630951 ~ 13656590 (+) False LOC120553484
XM_039791944.1 mRNA downstream 99407 13630954 ~ 13659234 (+) False LOC120553484
XM_039791933.1 mRNA downstream 129403 13660950 ~ 13667737 (+) True LOC120553479
XM_039791892.1 mRNA downstream 143257 13674804 ~ 13798380 (+) True LOC120553473
TU308693 other upstream 37455 13475145 ~ 13479027 (+) False yeats4
XR_005638103.1 other upstream 496222 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 1389937 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1759165 11689169 ~ 11757317 (+) True G227278
TU308207 other upstream 2403577 11102836 ~ 11112905 (+) False G227216
TU308903 other downstream 143277 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 237508 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 238519 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 243440 13774987 ~ 13775059 (+) True trnak-cuu_12
unassigned_transcript_1489 other downstream 270101 13801648 ~ 13801760 (+) True trnal-caa_21

Expression Profile