RNA id: TCONS_00072860


Basic Information

Item Value
RNA id TCONS_00072860
length 1744
RNA type mRNA
GC content 0.53
exon number 10
gene id XLOC_037009
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13733468 ~ 13799692 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGAGCTGCAGATGCTGCTGGAGGAGGAAATTCCAGCGGGTCGCAGAGCGTTGTTGGACAGTTTCACCAACCTTGACAGAGTCGCCGAGTACTGCGAAAGTAACTACGTACAGGCTCCAGACAAGCATGTCGCTCTAGAGGAAACCAAGAACTACACTACTCAATCCCTGGCCAGTGTGGCCTACCTGATCAACACTCTCGCCAACAATGTGCTTCAAATGCTGGACATCCAGGCGTCTCAGCTGCGCCGCATGGAGTCCTCCATCAACCACATCTCTCAGACGGTGGACATCCACAAAGAAAAAGTGGCCAGGCGGGAGATAGGCATCCTCACAACCAACAAGAACACCTCTCGCACACACAAAATCATTGCTCCAGCCAATCCTGAGAGGCCAGTGCGGTACATACGCAAACCTATCGATTACAGTATGCTGGACGACATTGGTCACGGTGTGAAGGTCAACACCCAAAACATGAAGATGGGGAGTCTTCTTCGCACCACACCTCCCACACAGAAGCCACCCAGTCCGCCGATGGCAGGCAAAGGCACGATAGGAAGACACTCACCCTACAGAACACTTGAGCCAGTGCGGCCTCCTGTGGTCCCTAATGACTACGTCCCAAGCCCAACACGCAATATGGTGCCCATCCTGCACCAAAGTCCTGTGCGCACGGCATCTGTTAATCAGAGGAACCGCACCTACAGCAGTGGGAGCAGTGGTGGCAGTCATCCCAGCAGCCGCAGCAGCAGTCGGGAAAACAGCGGGAGCGGCAGTGTCGGTCTTCCCATTGCTGTACCCACACCCTCTCCACCCAGCGCCTTCCCAGGTGCTCCTCAGTTCTACAGCATGAACAGGCCCGTCCCCAGACAGACTGCACCCTCAGTCGGGGGTTCACTGCCGTACCGCAGACCACCCTCACTCACGGGACAGACTTCCATGCCACCTAGCCAGCAGAATGGAGGGCCTTATTACAATCAGAGCCAAGCCTCAGTGGCCCCCCCTCCCCCCTCCGTACTACAGATCACACCCCAGCTTCCACTGACGGGGTTTGTGGCTCGCGTTCAGGAAACCATTACAGATGCGCCTCCTCCATCTCCTCCATCAGAAGAGCCCATGTTTGACGACACACAAAATCCGGCTGCTCCTCCAGAAGGCTATGAGGAAGAGGAGTCTTCTGTGGTGGAGTACAGTGACCCTTATGCTGAGGAAGACCCACCATGGGCTCCACAAACATACCTGGAAAAAGTGGTGGCAATCTACGACTACGTACGGGATAAGGAAGATGAGTTGTCTTTCCAGGAGGGAGCCATCATCTATGTGATTAAAAAGAATGACGACGGCTGGTATGAAGGCGTGATGAGCGGCACTACGGGACTTTTTCCTGGAAACTACGTGGAGTCCATCATGCACTACACAGAGTGAGCGTGTCCTCTGTCCCACACCAGCGCTGATCTGCAGAAAAGTGCAGAAGTGCAAACAAACCATGCTAATAACAGGCCGTGTTCAGAGACAAGTGCTACAATGGAAGAGGAAGCAATATGAAGCTGAACATCCAGACTTTGCACAGACGACGTTTAGGGAAATGTTAGAAATAACAAGTTTACCTTTAAATGAAGGATGAGGAGTTTGAAGTTGGATATGCATAAGCTAGATTTGGAGTGGCTATATTTTTCCACATTTGCTCATTCCACAGAATTTGGAGGGCTGTGCTGGGGCTGACAGATTATTTGTGGGGGGT

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0030027 lamellipodium cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0030296 protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-192 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI2 (abl interactor 2).

Ensembl:

ensembl_id ENSDART00000141314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075074 lncRNA upstream 262065 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 494563 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 499448 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 643729 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 789837 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075075 lncRNA downstream 312783 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 352476 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 1717841 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 1727919 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00075077 lncRNA downstream 1767884 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00072852 mRNA upstream 4655 13714379 ~ 13728937 (+) False XLOC_037008
TCONS_00072853 mRNA upstream 10987 13714411 ~ 13722605 (+) False XLOC_037008
TCONS_00072849 mRNA upstream 21601 13682133 ~ 13711991 (+) False XLOC_037007
TCONS_00072851 mRNA upstream 21601 13707933 ~ 13711991 (+) True XLOC_037007
TCONS_00072850 mRNA upstream 28573 13685921 ~ 13705019 (+) False XLOC_037007
TCONS_00072862 mRNA downstream 185875 13985567 ~ 13989879 (+) False XLOC_037010
TCONS_00072863 mRNA downstream 186735 13986427 ~ 13989059 (+) True XLOC_037010
TCONS_00072864 mRNA downstream 199928 13999620 ~ 14005116 (+) False XLOC_037011
TCONS_00072866 mRNA downstream 211131 14010823 ~ 14019390 (+) False XLOC_037012
TCONS_00072868 mRNA downstream 223694 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072854 other upstream 4656 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072844 other upstream 284944 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072843 other upstream 487066 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072822 other upstream 905472 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 1278649 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072865 other downstream 200111 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072867 other downstream 211182 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072872 other downstream 343381 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072875 other downstream 1767672 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072881 other downstream 2107341 15907033 ~ 15907820 (+) True XLOC_037024

Expression Profile

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