RNA id: TU308978


Basic Information

Item Value
RNA id TU308978
length 2446
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id G227734
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13956697 ~ 13965492 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACCTTGTAGACAGACCAGTTCACAAAAAAGTTTAATATTCAGACTCTTTGAAACAGAAACACATGGAGTCTTTTACCTAGATTAATTTCCATACATACATTTCAAACTTATTTGTTCCTTTAAAACACAGTAAAACGTGCATCTCCTTTCCCACAAGCGTGAGAAACAACCTTTACAAATGAATTATGAAAGAACAAAAAGCACACAATAATACAACTTAAAGTATTTCCAAAgggaaacaaatatattttaaagcatAGTACTGCAAATACATTCTTTTTTCCAGCAGAGACAAAACTCAAATAAGCACTTTGGTCTTCCTCCTCAAATACACTGAAGCTGATTATGCTAgcatttttatgaatgaaagtCCGATAGCTGAGgcaacattttaatcacatttaaGATATTTTCTGTGGGTATGATAACTGCATGTACCATGTGGGATTTACTACAGCGAGTGATGTGAATTGTCGATCCAATATTCTTAAATTCAGAGCTAGCATTCGCTTGAACAGCAAATGCATACTGTGTCAAGCAGCTGAGGTACAAATCAATTTCTCTGGACATTGAAACAAGATGTTACTTCTACCTTTCTATTTTATATCTGTTTTTAAAGTGCATTTTCTTTATTCGTGTTTAACTGGAGTGTTTAGGAACCTGTGACGGACTGACTTTACTTGTCATGCGCATGAATCTACCGTCTAATTAGCTCTGAGAGTTTGATATCAAATTCTGTACAAAATCCACAGAATTTCTAAACTGGTGACATGATGGAACAGTTTAATCTTGGCTGACACAAACTGACCAATCAGACAGtcgaaaacattttttttccccaagagCTAAACTCTTCATGCTGCTATGATATATGCAGGTGTTCAACCAAACTGCAACTAAGCTACAATACTAAAATAATTCCTCATTTTTGTCAGAGGAGCTCCAAAAAGCTAGATTGAATTTTTTTGTAGTACTATATCATTACTTATTTTAGAATAGAACAATACATTGTGTCCAAAATCACCCTCTCATTCACTATTTTCTATAGATTATACACCCAATAGTTTCATCTATAGCAAATGGTAAATTCATATTTCTATATAGAGCAAACATTTCAGACAGTTTCAGTTAGACACAAATCTgtgtaaactcaaacaaaatcaacaaatcaGGAACTGAAACAAGAAAACACCTGACTCAGATCTTATACAAAAAGGAAGTGATCGTATGTTTACCAATTTAGGAAGTAGTTTTGCATGCAGGGAATAAGCCAATGTCCTAATATTTGCACTTAACCAAAGTCGTACACACTCAGCTAGCAgtcattttaaccatgtttctACCTACAGTACGCGTATTACTGGAAATACTGTCAAATGATATTGGTCATGAAATCAAAACTCTGTGAAGGGGTCTTTTTAAAACTTAAGAGTTGTCTGTCAATGTCAcctattatgtttttttcattaaCTGGATGATTGTTTCTTTGCAGTGCCAATGTCGTCTGGCTTTTCACCTCTCCCCAGTGAGAACAAAACCTAGCAACAATTTTATCAGTGAGCAGTATGGAGGTGTTGCTGTACTTCTTGCTGGTCTCAGAGCCCAGCGTGACGAACCTGAGCAGGAACAGAGACAGACTGGAGCACCAGATCACCAGCTCCCAGTTATAGTGACACTCCAGGAACGTTTCATGGATGTGGAGCAACTGGAGGAAGAGATGTCCTCTCTGCGACACTGAGCAGGAAGAAAAAGAGCCATATAAGGCAGACGCGCACCAGGAAGCTAAGTGTTACCATGGTGATGACCAAGGCGTCTGATCCAGACCCGCCTCCCAGCGCCACAGACAGCATCTCATTGGCTGAGAGTGTGGTCAGCTGATCAAAGTCACGGTACTGAGCCAGCCTGCAGGAGATGGAGAAAGACTGGCGATGATCTGCACTCTGCACAGTGAAGGAAGTCTTCCCACATCAGGTCCTCGGTCTCAGACTCGTGTCGAGTGCTCTCCGAGTCATGAGTCCTCAGACTGGAACATCTGGAGCTGCAGCTGGTGCCGGACTTGGGCACGTCctccGCTGCGTAGTGTTTCTTGTAGTGGTGTGTATTCTTGCGGTTTCTGAGCGTACAGTCGCTGTTCATTCTTTCAACTCCCCTGCGGAGTGCGCTGTAGGATGCTTCAGGGTCCTCCTCACTGGATGCCTCATCTGATGCTGGCTCCTTATTGGCGCTTGCCAACGTCAGTCCCGGGCTGCGGGGTGCGTGAGTGTGTACGGACTGGACGTGAGAGTTCCAGCACACCTCGTCAGCCCTGTTTAGCGACTCACATCGCTGCTCATGGAGCTGAAGCCCCTCCTCGCTGCTCCGATTGGTCACGCGGCCGTCCAGCGACACGTAGCCGTTGTCTGTCTCTGTCGACTTGTCGATGGACAGTTTGGACTTCTTAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308840 lncRNA upstream 401871 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 425150 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 462836 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 881349 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 913679 12987713 ~ 13043018 (+) True G227499
TU308980 lncRNA downstream 2051 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 50606 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 66903 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 84927 14050419 ~ 14054224 (+) True G227743
XR_005638172.1 lncRNA downstream 150251 14115743 ~ 14116336 (+) True LOC120553487
XM_039791942.1 mRNA upstream 17418 13902858 ~ 13939279 (+) True adipor2
XM_039791937.1 mRNA upstream 61696 13802193 ~ 13895001 (+) True wnt5b
XM_039791936.1 mRNA upstream 61696 13802193 ~ 13895001 (+) False wnt5b
XM_039791938.1 mRNA upstream 61696 13802193 ~ 13895001 (+) False wnt5b
XM_039791940.1 mRNA upstream 61696 13802193 ~ 13895001 (+) False wnt5b
XM_039791946.1 mRNA downstream 36640 14002132 ~ 14004905 (+) True LOC120553485
XM_039791948.1 mRNA downstream 36640 14002132 ~ 14004905 (+) False LOC120553485
XM_039791909.1 mRNA downstream 171699 14137191 ~ 14144663 (+) False LOC120553474
XM_039791912.1 mRNA downstream 171699 14137191 ~ 14144663 (+) False LOC120553474
XM_039791908.1 mRNA downstream 171701 14137193 ~ 14144663 (+) True LOC120553474
unassigned_transcript_1494 other upstream 121696 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 122366 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 123548 13833039 ~ 13833149 (+) True trnal-caa_23
unassigned_transcript_1490 other upstream 154494 13802093 ~ 13802203 (+) True trnal-caa_22
unassigned_transcript_1489 other upstream 154937 13801648 ~ 13801760 (+) True trnal-caa_21
TU309000 other downstream 36871 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other downstream 36871 14002363 ~ 14004849 (+) False LOC120553485
XR_005638140.1 other downstream 1203112 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2805566 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2805570 16771062 ~ 16831243 (+) False cald1a

Expression Profile