RNA id: TCONS_00072862


Basic Information

Item Value
RNA id TCONS_00072862
length 2891
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_037010
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13985567 ~ 13989879 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAATCGAATAATCTATTGACCGGGCTATGTGATAGGCTGAGAGTCAAACCACACCCTTAACCAAATTTTCCATCTCCtctactgtttttttcttcttctcaagtctcatttgatttttttccctTCGATTACACATATTGTGCAAATTGGCTACATTACTTGCAAAATTTGAGCACTTTACGGGCATTTGCAGTCAGCTTGAGGTTTCCTGCCACGTTACTGATGTCACAAAGCTTTCCAGAACTCACTCATGTATAAGAGACAGATACCCCCCTTCTCAGTTATTGCACGACACAATGATTATCACACTTATTATAATCTTTATATATATCCCACTGGGATTCGCTCTGGTTGTTTCTCAGCCTTATCGTGTGACAGGAAAAGATGGAGAAGTCTCCATACACTGCTCTTTTAGATCCAAACTGAGGCCGGAAGAGGTCCAGGTTTCTGTGTATAAAGCATTGCATGGACACGAGAGGATCTGTAGCGCGTATGTCAACCTCTCAGAGCCCTACTTCGCAACAGATGGCCCAGTTCGCTGCAGAGGGAATATTAACTTTGGAGGAGTGGATCTGATCATCGCTGGACTGCGAGGGGAAGACACGGACGTCTATCGCTGCGAGATCGAGATCCTCTTTCCACCTCCATATCTCAGAGCGCTCGGGAACGGCACTGTTGTTTACATACAAGAAATCCCAAACTGCCTCACTGCACACAATGCATCCACCCAGAGCCAGCGTCAAAGCAAGAGCCAGACATCTTATCGGGAAACTGTTGAAAATGATATTGGTCCACTTCTTCTGCTATACATCATCTTGATCATCACTTCCTGCAGTTTTTTTCTACAGGTAAGAAAAATGTCTATTccagtattgtttttattttttttattccactgaAAAGATCAGGATCTCTACCCAGTGGCTTTAATGtgacttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgatgCAAAATAGTATTTATGTCAGACAATTGGGTTGGattaaaatgcaaatttactacaaatttttaattattttcaaagaTTTTGGTGCTGTGATTAAAACCACTGAAATACAACAATCATAAAAAACTGTTTGCTGTATGAGGTGCCCACGATAAAGATATCATGTTCATTCACACAATTTGtgcatgtttacacacacacacacacacacacacacacacacaaaaaatgcagtTAATTCAGCCTAACCACTCCAAGTTACAACAGGTTACCTCTTATTTTACTTAAAGTCAACTTgtggcaacaggtttactcacatttttaggTAAAGTAACtgctattttttcttttaaaggcaAACTTTGTATAAAGCAGGTAGTTCATGGTCTTTTCAACAGGCTAAAACTATTGTAGGCTGTAGATGAACTCTTACAGTATTTACAGTTgactcaaaaatatatttcctgcttgttcagactacttaattaaaatgagctaaatcaacacaattcttaagttttttttttttttttttgcaggggtaacttgttttatgttaaaatttgttaaaattaagtcaacttaatcaatttatgtttggacaacatgaaagaacagtgtggaaccctgcatttttttaagtgtttgacATTAATGTGAACAGATGTCATTTACATTTTCCTCTTCTCTATAACAGATCGCCATCTGCAAATGGAGAACTTCTTCATCTATGGCACCGATGCTTTCCCAAAAAGAGAGCTATGTGAAATTCTAGGGGGCGTGATTTTCCCCTTCCTGCATGTCCTAGCATGTATTCACACCTGCATGTACTCGCATGTCATTTTCTCCCGCATGTATTTACATGTCATTTTTACCTGCATGTATTGACATGTATGCACTGTATTTTCTACATGTACTCACATGTATTCCTACCTGCATGTATTCACATGTATTTACACTGATATTTGACgttgttatttcattttttaaacaatagttttcttttttatgttaaaaaataacctttaaaggggacctattatgcaaaaatcagttttataagaagtttaaatacatttgtgtgGAAACtatgtgaatataaccagcttctaatggtaaaaatgtattcgttttttttattataatcacacttgataaaacagtcaatagaaacactttgattgacattctctcttcgtacatgtcatcagaggggaaaagctcTGCCCATTGGTGACTAtttcttcctcattagcataagacgTTAGTCTTGCTTTTAaaactgccactatgctgacacataggcatctgtagctccgccctattttaaaaagagcacaatctcatttgcatttaaagtaacagtcgccaaaatggcacaattagaatTAAAGCCTACAAGGGTACGtttcaaaaagttataaataattatttaggggTATTTGGAGCTGAAACGTAACATACACATTCTAGGTACATCAAAGATTATTGTAAACAAGGTgcataatagatcccctttaaaataaaaatggtggTTGAGCAACTGTTTATTATGGCTAAAGAGGGGAAATGAATAAAGAATTGTTTCAACAGTTCTAATAAATGTTCTACTTTTACATATGGCTGGTTGGGAGAAGATGTCACAATTTGATAAATTGTAAGAGTTTGTTTGATTTCTGAAATGTTGACTTTTTTCTGTgtatatttttaatgcaattttatgCATATTCAAATAAACCTATTTTCCACGATAAGATGTAATTG

Function

GO:

id name namespace
GO:0042129 regulation of T cell proliferation biological_process
GO:0002376 immune system process biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04660 T cell receptor signaling pathway
ko04672 Intestinal immune network for IgA production
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05162 Measles
ko05322 Systemic lupus erythematosus
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-070912-128 Predicted to be involved in T cell receptor signaling pathway. Predicted to act upstream of or within regulation of T cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in multiple sclerosis and type 1 diabetes mellitus. Orthologous to human CD28 (CD28 molecule).

Ensembl:

ensembl_id ENSDART00000102296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075074 lncRNA upstream 514040 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 746538 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 751423 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 895704 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 1041812 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075075 lncRNA downstream 122596 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 162289 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 1527654 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 1537732 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00075077 lncRNA downstream 1577697 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00072860 mRNA upstream 185875 13733592 ~ 13799692 (+) False XLOC_037009
TCONS_00072856 mRNA upstream 186191 13733468 ~ 13799376 (+) False XLOC_037009
TCONS_00072855 mRNA upstream 186191 13733468 ~ 13799376 (+) False XLOC_037009
TCONS_00072859 mRNA upstream 186191 13733592 ~ 13799376 (+) False XLOC_037009
TCONS_00072858 mRNA upstream 186191 13733592 ~ 13799376 (+) False XLOC_037009
TCONS_00072864 mRNA downstream 9741 13999620 ~ 14005116 (+) False XLOC_037011
TCONS_00072866 mRNA downstream 20944 14010823 ~ 14019390 (+) False XLOC_037012
TCONS_00072868 mRNA downstream 33507 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072869 mRNA downstream 33514 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA downstream 34063 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072861 other upstream 198614 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072854 other upstream 256631 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072844 other upstream 536919 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072843 other upstream 739041 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072822 other upstream 1157447 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072865 other downstream 9924 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072867 other downstream 20995 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072872 other downstream 153194 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072875 other downstream 1577485 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072881 other downstream 1917154 15907033 ~ 15907820 (+) True XLOC_037024

Expression Profile

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