RNA id: XM_039791948.1


Basic Information

Item Value
RNA id XM_039791948.1
length 2127
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120553485
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14002132 ~ 14004905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacaaattaactaAAAAGCAACAATATATCACAGCAGAATGTCTCCGTTTAATGTACTTGAACTGTAAATCGAATATAAACACAGCCACcaagaaaaatagaaagaacGTTACGTACCTCTAGTGGACGTTAAACCTCACTACAGGAAAAAATTACAACGAGTTTGCGCTTTTGCAAAAACTTTACGGTTACGTGACGTAACGAAACCAGGACCAATTGGCTTCCAGGATGGGTGGGACAAACACAGATAACGGACCCAAAAATCCCTCCGTCTGCTTGATGCATGGATGATAATTATGTGAATTATGTGAAACGTTATGAGTTTTGGTGTTTGCCATACAGGGAGACGACAATGTCGGCCACCGATGTAGAAATACACTGAATCAGTGAGATGTCTCTGGCTCAGAGGGTCTTGTTGACCTGGGTCTTCACCCTGGTCTTCCTCATCATGTTGGTACTGAAACTGGACGGGAAGGTGCAGTGGAACTGGTTCCTCATCTTCCTCCCGGTCTGGGTATTTGATGGCATCCTCATCCTCATGCTTGCCATCAAGATGGCAGGCCGTTGCAAGCCCGGGTACGACCCACGCAACGGCTCTCCAGACCTGCGTCTACGTGCCTGGTACCTGACGGCCATGCTGCTCAAGCTGGGCTTCTGCCTGACGCTGTGCGCCAAGCTGGAGAAGCTAGCTGATGTAAAGCTGACGTTTGTGTGTATACCACTGTGGACCATGTTGCTGGGGGCGCTGGTGGAGCTGGGGCTGAATATCTTTCCTGAAAGGAGAGAGGCCTAAGAGCTATGAATCATTacaccaacaacaaacaaaaacctatCAGAAAATGGTTgagaatatttttgttgttggatGACCAAGACTTTGTGAAAATTGGAGCTTTTGCTTTGGCCTGATTATGATTCCAGAAGACTGAGGCTCAGAAATTAATCAAATCATTATATTAGTATTCATCTTAAGAATAAGAGATTTTGTGTAAAAATCTAAATCGTAGTGTGTACAGACCTCACAGGTGTATGCTGTGAGGGCTTCAGCATGGCAGGGACTCTCTCTAGCCTGGACTGTCTgtccattcatttaaaatggtCAAAATAGCTCAAAAATGACTCCATTTTCTTTATAAAGAAAAAATGCCGGAAGGGGATCAACTGTAAATGCATACGGTCTACTGTGAAGCCTACACTAAAAGGAAACATTAACATCCTCTAATGTTTGCTTTTGTCTTGAACTCAAGAGGTTCAGTATTGTTATGTATATAGGCTAGCACAGCCGCTCTCGTAAAGATCGCTACACAGGGAGGATGTGAACAGTATTTCATTTTGACTCCACTTCCTTTATTTAAGCTGCAGAACATTAACTATCACTCTTGGTACCGAATTGTGGAGTGTACCTTTTGTTACATATGCTTTAGATATTGTGTGGCTTTATTTAAGTCACAatcacttttcttttcattcctgATCTGTGCAGAGTAGTTGGCCAAATATTATTTCACAAGTTATGAATTTAGAGGTGTTCGGTAAAACAGCTTGATTTGGTTGCAATAACATAAGGAAATTGGATAATTGAGGTTCAGTTCAAATCAGTTCAGGGCATAAAAGCATCTTTGAACAACTTGTGATTTTTCCCCAGGCTACCCTCTTTACTCTGTACAATGTCTCTTTTGTACCTTGTAAATCATCATGTGCCCCATGAAAAGCAGTAAGCTGTTATTACTGTAGATAAAAGGGCCGCATTCGCTATGAAAAAAAACCCTTCGACATGTATCCTGTAAAAGATCatgttattactgtatattaattATTAGGGTGCAAACGTGCATCAGAATACTTTCTACTAGCTAGTATTGTGTCATCATTGTTTCATATTTCAACTTTATGGTACGGCTGGCACTGTGGCATGCATACCATTTGTTTTGTGCCACTTGAttgtttatttcaaatacaTTCTTTGCATTATTTTTGCACTATGGTAAAAAAAGGAATAGGTGTTTTGAGATTGAAAGTATTTGATAATTATTGCACGTcttttaaaaaagtaaatggATTCTGTATATTAAAAGCTGCGTATTTGTCTCCAATAAATACACATTCAAGTGTTGCCATACTCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308980 lncRNA upstream 32445 13967543 ~ 13969687 (+) True G227736
TU308978 lncRNA upstream 36640 13956697 ~ 13965492 (+) True G227734
TU308840 lncRNA upstream 447306 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 470585 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 508271 13493401 ~ 13493861 (+) True G227639
TU308995 lncRNA downstream 11193 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 27490 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 45514 14050419 ~ 14054224 (+) True G227743
XR_005638172.1 lncRNA downstream 110838 14115743 ~ 14116336 (+) True LOC120553487
TU309111 lncRNA downstream 214404 14219309 ~ 14219604 (+) True G227811
XM_039791942.1 mRNA upstream 62853 13902858 ~ 13939279 (+) True adipor2
XM_039791938.1 mRNA upstream 107131 13802193 ~ 13895001 (+) False wnt5b
XM_039791909.1 mRNA downstream 132286 14137191 ~ 14144663 (+) False LOC120553474
XM_039791912.1 mRNA downstream 132286 14137191 ~ 14144663 (+) False LOC120553474
XM_039791908.1 mRNA downstream 132288 14137193 ~ 14144663 (+) True LOC120553474
XM_039791913.1 mRNA downstream 132682 14137587 ~ 14144663 (+) False LOC120553474
XM_039791927.1 mRNA downstream 139876 14144781 ~ 14159988 (+) True LOC120553478
unassigned_transcript_1494 other upstream 167131 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 167801 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 168983 13833039 ~ 13833149 (+) True trnal-caa_23
unassigned_transcript_1490 other upstream 199929 13802093 ~ 13802203 (+) True trnal-caa_22
unassigned_transcript_1489 other upstream 200372 13801648 ~ 13801760 (+) True trnal-caa_21
XR_005638140.1 other downstream 1163699 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2766153 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2766157 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2914758 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3585186 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile