RNA id: TU309214


Basic Information

Item Value
RNA id TU309214
length 228
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G227895
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14427101 ~ 14427328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAAATGACTCAAAGTCTGAGTGTCAAGCAACTGCTCCATTTTCAAAAAAGGTTGAAGAGGCAGGGTAAACTTCTCAAAGCACTCGTGCAGCGTTAACTTCCAAGTCCCCAGCATCCACTCAAATTAATTGTGGACTAATCAGAACttattgtaagttgctttggacaaaagcatcTGCCAAGTAAATGTAATATCATGTTAAGTAAAGCATGGCAAGTTTTGAac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309182 lncRNA upstream 48407 14376864 ~ 14378694 (+) True G227875
TU309181 lncRNA upstream 51636 14374819 ~ 14375465 (+) True G227874
TU309146 lncRNA upstream 93178 14326137 ~ 14333923 (+) True G227843
TU309111 lncRNA upstream 207497 14219309 ~ 14219604 (+) True G227811
XR_005638172.1 lncRNA upstream 310765 14115743 ~ 14116336 (+) True LOC120553487
TU309215 lncRNA downstream 857 14428185 ~ 14428586 (+) True G227896
TU309224 lncRNA downstream 34833 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA downstream 34833 14462161 ~ 14462447 (+) False LOC120553353
XR_005638167.1 lncRNA downstream 73473 14500801 ~ 14547427 (+) True LOC120553441
TU309264 lncRNA downstream 93776 14521104 ~ 14521760 (+) True G227935
XM_039791678.1 mRNA upstream 6142 14413543 ~ 14420959 (+) True lmod2b
XM_039791674.1 mRNA upstream 14086 14397723 ~ 14413015 (+) False asb15b
XM_039791676.1 mRNA upstream 14086 14404378 ~ 14413015 (+) False asb15b
XM_039791675.1 mRNA upstream 14086 14406873 ~ 14413015 (+) True asb15b
XM_039791616.1 mRNA upstream 52447 14367920 ~ 14374654 (+) True ints13
XM_039791686.1 mRNA downstream 27265 14454593 ~ 14462460 (+) False LOC120553353
XM_039791688.1 mRNA downstream 27270 14454598 ~ 14462460 (+) False LOC120553353
XM_039791683.1 mRNA downstream 27276 14454604 ~ 14462460 (+) False LOC120553353
XM_039791685.1 mRNA downstream 27997 14455325 ~ 14462460 (+) True LOC120553353
XM_039791687.1 mRNA downstream 29502 14456830 ~ 14462460 (+) False LOC120553353
TU309000 other upstream 422208 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 422252 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 592100 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 592770 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 593952 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 741276 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2343730 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2343734 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2492335 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3162763 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile