RNA id: TCONS_00072864


Basic Information

Item Value
RNA id TCONS_00072864
length 972
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_037011
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13999620 ~ 14005116 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttgtgttaccgttgattatctggactatttatacaaccatttcaccacagtttgtcatcgcgtcgtttgtccTTGTCTTGCCTGCCGCAGTATTACCACAAAAACAAAGTGAAGATCTACACCCAGCATCACACTGTCAAACTGACGAGGATACGACAACATGCCTGACATCTTCACTCTTATTGCTCTCAGCTTTTCTCTCATGCTTCACAATGCACACTGCATCTGGGACGTGAGTGAACCTCTCAACCACACACTCAATGACGATGGATCAGTCAATGTCACATGCATGATTTTGGGAAATGAAAATTTCAGTGAATTGGACGCCaagctgaaaatgaatggcaAATATGTGTGTGAGGTTGAAGACAAAGGTGAAACTAGTGGACAAAACTGTTCATTGCATTATGAAGACAAGAAATTCATGTTTAAATTGAACAATCCCAAAGACATACACAATTCTACATTTTCCTGTGAGATATCGAAAATTAAACCATTCCCTGTCGAAACAAAGGCAGGGCCAGAAGCTAAGCTTTTTCAAGAAATCCCAAACTGCCTCACTGCACACAATGCATCCACCCAGAGCCAGCGTCAAAGCAAGAGCCAGACATCAGATCGGGAAACTGTTGAAAATGATATTGGTCCACTTCTTCTGCTATACATCATCTTGATCATCATTTCCTGCAGTTTTTTTCTACAGATCGCCATCTGCAAATGGAGAACTTCTTCATCTATGGCACCAATGCTTTCCCAAAAAGAGAGCTATGTGAAATTCTAGGGGGCGTGATTTTCCCCTTCCTGCATGTACTCGCATGTCATTTTCTCCCGCATGTATTTACATGTCATTTTTACCTGCATGTATTGACATGTATGCACTGTATTTTCTACATGTACTCACATGTATTCCTACCTGCATGTATTCACATGTATTTACACTGATATtagaagttattttttattttttaaacaa

Function

GO:

id name namespace
GO:0042129 regulation of T cell proliferation biological_process
GO:0002376 immune system process biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-309 Predicted to be involved in T cell receptor signaling pathway. Predicted to act upstream of or within regulation of T cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); hematologic cancer (multiple); hepatitis B; kidney disease (multiple); and primary immunodeficiency disease (multiple). Orthologous to human CTLA4 (cytotoxic T-lymphocyte associated protein 4).

Ensembl:

ensembl_id ENSDART00000143229

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075074 lncRNA upstream 528093 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 760591 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 765476 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 909757 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 1055865 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075075 lncRNA downstream 107359 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 147052 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 1512417 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 1522495 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00075077 lncRNA downstream 1562460 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00072862 mRNA upstream 9741 13985567 ~ 13989879 (+) False XLOC_037010
TCONS_00072863 mRNA upstream 10561 13986427 ~ 13989059 (+) True XLOC_037010
TCONS_00072860 mRNA upstream 199928 13733592 ~ 13799692 (+) False XLOC_037009
TCONS_00072855 mRNA upstream 200244 13733468 ~ 13799376 (+) False XLOC_037009
TCONS_00072866 mRNA downstream 5707 14010823 ~ 14019390 (+) False XLOC_037012
TCONS_00072868 mRNA downstream 18270 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072869 mRNA downstream 18277 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA downstream 18826 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072871 mRNA downstream 23041 14028157 ~ 14041287 (+) True XLOC_037013
TCONS_00072861 other upstream 212667 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072854 other upstream 270684 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072844 other upstream 550972 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072843 other upstream 753094 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072822 other upstream 1171500 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072867 other downstream 5758 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072872 other downstream 137957 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072875 other downstream 1562248 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072881 other downstream 1901917 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072882 other downstream 1977228 15982344 ~ 15985797 (+) True XLOC_037025

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_00784200_00785176.mRNA True 1182 mRNA 0.37 3 CI01000037 783585 ~ 785176 (+)