RNA id: TU309264


Basic Information

Item Value
RNA id TU309264
length 657
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G227935
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14521104 ~ 14521760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctgtcccagccatcctgcttgcaagtgtctgctcattaaacaacaagctggactacatcctccttcaacgaaaatcccaacgtgagttcagtgactgctgtgtttttgttgttgtggaaacatgcctgaacaacagtgtaccggaaccgggactatccagctaccaggctgctctcgccggcccgtggaggtgggctgttaaacggactggtgtagaaataaaatccaactagctactgctaactgctggtggagcttgtgactgttaaatgccgaccattcgacattccatgctaattcacggctgtgtttatactctgtgtttagctacaccaatgctagtatgcgttagctgaactttacggatcctgcttgcaagtgtccgctcatttagaccacaaactggactacatccaacttcaacgacactcccaacgtgagttcagagactgccgtgtttttgttgttgtggaaacctgcctgaatagtgtaccggactgtccagctaccaggcctgctagccctccgagctagagatgctctgtcgccaggtaaaagaggtgggctgtgttaacaccgagtggcgcagaaatgtggtgatttgtatccatttaactgctaactgctggtggagtttgtgactgttaaatgccgac

Function

GO: NA

KEGG:

id description
ko04139 Mitophagy - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309224 lncRNA upstream 58630 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA upstream 58657 14462161 ~ 14462447 (+) False LOC120553353
TU309215 lncRNA upstream 92518 14428185 ~ 14428586 (+) True G227896
TU309214 lncRNA upstream 93776 14427101 ~ 14427328 (+) True G227895
TU309182 lncRNA upstream 142410 14376864 ~ 14378694 (+) True G227875
TU309279 lncRNA downstream 248217 14769977 ~ 14770247 (+) True G227948
TU309280 lncRNA downstream 252553 14774313 ~ 14774820 (+) True G227949
TU309281 lncRNA downstream 272021 14793781 ~ 14796104 (+) True G227950
TU309302 lncRNA downstream 532945 15054705 ~ 15057478 (+) True G227970
TU309304 lncRNA downstream 538244 15060004 ~ 15060834 (+) True G227972
XM_039791683.1 mRNA upstream 58644 14454604 ~ 14462460 (+) False LOC120553353
XM_039791871.1 mRNA downstream 229020 14750780 ~ 14754250 (+) True LOC120553461
XM_039791477.1 mRNA downstream 646845 15168605 ~ 15199952 (+) True LOC120553256
XM_039791480.1 mRNA downstream 724398 15246158 ~ 15256323 (+) True fgl2a
XM_039791481.1 mRNA downstream 724398 15246158 ~ 15256323 (+) False fgl2a
XM_039791482.1 mRNA downstream 724538 15246298 ~ 15254589 (+) False fgl2a
TU309000 other upstream 516211 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 516255 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 686103 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 686773 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 687955 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 646844 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2249298 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2249302 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2397903 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3068331 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile