RNA id: XM_039791868.1


Basic Information

Item Value
RNA id XM_039791868.1
length 3794
RNA type mRNA
GC content 0.51
exon number 13
gene id grm8a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14634110 ~ 15053285 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATCCGATTGGATGGGGACATCATCCTCGGCGGATTATTTCCTGTGCACTCTCGGGGGGACCGTGGCACACCCTGCGGGGagctgaaaaaggaaaaaggcaTTCATCGTTTGGAGGCCATGATGTTTGCCATAGACCTGATCAACAAGGACCCCGAGTTGCTGCCCAACATCACGCTGGGGGCCCGGATCTTGGACACCTGCTCCAGGGACACGTACGCTCTGGAGCAGTCCCTGACTTTTGTGCAGGCCTTGATAGAGAGGGACGGCTCCGACGTCCGCTGCGCTAACGGAGACCCTCCAATCTTCACCAAGCCGGATAAAATCATAGGGGTGATAGGAGCCGCGGCGAGCTCGGTGTCCATCATGGTGGCCAACATCTTGCGCCTGTTTAAGATCCCCCAGGTCAGCTACGCCTCCACGGCACCCGAATTGAGCGACAACACTCGCTACGACTTCTTCTCCCGCGTAGTACCGCCAGACTCCTACCAGGCCCAGGCCATGATGGACATTGTCACGGCGATGGAGTGGAACTACGTGTCCACGCTAGCCTCAGAGGGCAACTACGGAGAGAGCGGCGTGGAGGCCTTTGTCCAGATCTCCAGAGAAACCGgTGGTGTGTGTATCGCCCAGTCCTTGAAGATCCCCAGGGAACCCAGGCCAGGGGAGTTTGACAAGATCATCAGACGCCTGCTGGAGACCTCCAATGCCAGGGCCGTCATCATGTTCGCTAATGAGGACGACATACGACGAGTTTTGGATGCAGCTAAAAGGAACAACCAGACGGGTCACTTCCTGTGGGTGGGTTCGGACAGCTGGGGGTCCAAAATCTCCCCTGTGATTGGCCAGGAGAAAGTGGCTGAGGGAGCTATCACGATTCTTCCCAAACGAGCATCTGTGgatgcgTTTGACCGGTATTTCCGTAGCCGCTCGCTGTCCAACAACAGAAGAAATGTTTGGTTCGCTGAATTCTGGGAGGAAAACTTCAACTGTAAACTGGGAATGCATGGTAAACGGCCTGGCAGCCTGAAGAAATGCACAGgTTTAGAAAAAGTGGGTCGTGATTCCAGTTACGAACAGGAGGGGAAGGTTCAGTTTGTGATGGATGCGGTGTACGCCATGGCCCATGCTCTGCACCGCATGCACCGGGAGCTCTGCTTCGGATACCCAGGCCTCTGCCCGCGCATGGCCAGCATCGACGGCAAAGAGCTACTCAGCTACATTCGTGCCGTCAACTTCAACGGAAGTGCCGGTACACCAGTGGTTTTCAATGAGAATGGAGACGCTCCAGGAAGATACGATATCTTCCAGTACCAGAGAACCAACAGGTCTACTGCAGAGTACAAAGTCATTGGCTCCTGGACCAATAAGCTACACCTCAAAcTCGAGGCCATGCGTTGGAAGACAGGTGACCCATCTCTCCCACCCTCTGTATGCAGCATCCCATGCCGTGCGGGCGAAAGGAAGAAAGTGGTCAAAGGTGTGCCGTGTTGCTGGCACTGTGAGCGCTGTGAAGGATACCACTATCAGGCATCAGAGTTCACTTGTGAGCTGTGTCCTTATGAGATGCGACCTGATGTCAACCGCACTGGCTGTGTTCCCATCCCGATCATCAAGCTGGAGTGGCACTCCCCCTGGGCCATCGTCCCTGTCTTCATCTCCATGCTGGGGATCATCGCCACCTCTTTCGTCATCGTCACTTTTGTCCGGCACAATGACACGCCCATCGTGCGAGCGTCGGGACGGGAGATGAGCTACGTGCTGCTAACGGGGATCTTCCTCTGCTACGCCATCACGTTCCTGATGATTGCGACGCCCGATGTGGGAGTGTGTTCATTCAGGAGGATTTTCTTGGGCTTGGGGATGTGTTTTAGCTATGCCGCGCTGCTCACCAAGACCAACAGGATACACCGCATCTTTGAACAAGGGAAGAAGTCTGTAACAGCACCCAGGTTCATCTCTCCCGCCTCCCAGCTCGTCATCACTTTCTCACTCATCTCAGTTCAGCTGCTGGGCGTCTTCGTCTGGTTCGCGGTGGACCCGCCACACACGGTTGTGGACTACGGCGAGCAGCGGACCCAGGACCCCATGTCAGCGCGCGGCGTCCTCAAGTGTGACATCTCGGACCTGTCCCTCATCTGCTCCCTGGGTTACTCCATCCTGCTGATGGTGACGTGCACAGTTTACGCCATTAAGACGCGAGGCGTGCCCGAAACCTTCAACGAGGCCAAGCCCATCGGATTTACCATGTACACCACCTGCATCATCTGGCTGGCGTTCATACCCATCTTCTTTGGAACATCACAGTCTGCAGAGAGGATGTATATCCAAACTACCACCCTGACCATCTCTCTCAGCCTGTCTGCCTCCGTGTCTCTGGGGATGCTCTACATGCCCAAGGTCTACATCATCCTCTTCCACCCCGAGCAGAACGTACCCAAACGGAAACGCAGCTTCAAGGCGATTGTGACAGCTGCTGCCATGTCGGGGAAACTGAGCCAGAAGGGAGACCGCCCCAATGGAGAGGTGAAGACCGAGCTATGTGAGAGCATGGAGACCAACAAAGTGTGATGGCGAAACACAattgaaatgaagaaaaaaaattataataaaaggGTTGTATGAAAGCATCAGAGTATAACAATGGCTCAGTTAGAGGCCTGCCATGGCTGCAAAAACATTGACATTTACCATGGAACGCTTGAGGGGACACGAGACATAATGGGTTTGACAAAAAGCCCCAACTGCTCAGGTGGACTTTGGATGTGACACTTTAACGTGAACACCTGAAGCAAAATCTGCTCTCAACTGCTCTTTCTTCTGTTCCCTTTCCTTCCATACCTCCAATATGTCTCTTCTCTTTCATTTTCCCTTTCcctccttattttttttatttttattttttcatttttcttgtcCTCACACCTTGGCCCCATCTTTTTATCAtcttctttccctctttctATGTTCCACCCTTTTCATATTCACGCAGCTTCATCAACTAAGACGACATATGTCAGCTACAGCAATCATGCCATTTGAAGGGACcacagaggatgaagaaaggGATTGGACAGGAGAGGGGGGCGTGTCTTGGGGCAGTGCAAAGCGGAAGAAGGAGCCATCGTTCTTAGCCGATTGGCCGAAGAACTGGCGGACAGACTGAGCGCCCAATGGAATCCAAGCATGAGACATTTTGTATTGTTCCGCATCAAACCACAGAGAGGTGGGACCACATAAACAGCCAGTCAGTGTGCCTGCTTTCCCGCTGCTCACAGCTCATTGGTCCTAACATGAACttacctgtttaaaaaaaaaaaaaaaagagacaacatgaaaaaagtgacatacCATAGGACACTGTGGTGGACAGAGTAACTattaaaacctaaaaaaaaacaacataaaaaaaaaaaaaaaaaaaaactctcagaaACCTTGTAGACATAATATCTAAAAGGGCAAATGTGGGGCCGGAAAAGAGATTTAacagattacattttaaaagatattaaaaaaagagaaatgtcaGAGGAAATCTATGAGACTCAAACATGTTTGTTGTTATTCTCTACTTGTAAGTATTTTTGTGGTTGTGACGATTTTTTCATTCTTGTCTCACCGTTGTCTGATGGTTCGCCCTTGCATAATGAGATGAGTGTGTTCCCTCCTGCTGTCTTGGCTAACCGGGTTGTAGCCTTGGGTTGTGAACCTGTAAAATGCCATGGTTGAAGCATGCCAGTTTTTATACAAAAAGgagatttatttataataaaggAATGTTTTGCAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309363 lncRNA downstream 1296 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 18917 14774317 ~ 14774848 (-) True G228021
TU309361 lncRNA downstream 22798 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 23518 14769998 ~ 14770247 (-) True G228019
TU309356 lncRNA downstream 150316 14635655 ~ 14643449 (-) False grm8a
TU309355 lncRNA upstream 125 15047327 ~ 15053285 (-) False grm8a
XR_005638141.1 lncRNA upstream 122441 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 234264 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 243037 15290239 ~ 15290493 (-) True G228066
TU309417 lncRNA upstream 243672 15290874 ~ 15291223 (-) True G228067
XM_039791824.1 mRNA downstream 239900 14534878 ~ 14553865 (-) True gpr37b
XM_039791825.1 mRNA downstream 325358 14465755 ~ 14468407 (-) True LOC120553439
XM_039791691.1 mRNA downstream 343176 14426067 ~ 14450589 (-) True waslb
XM_039791677.1 mRNA downstream 387272 14401227 ~ 14406493 (-) True LOC120553349
XM_039791673.1 mRNA downstream 395986 14392392 ~ 14397779 (-) True LOC120553347
XM_039792430.1 mRNA upstream 8273 15055475 ~ 15089983 (-) True znf800b
XM_039792003.1 mRNA upstream 47205 15094407 ~ 15126770 (-) True atxn7l1
XM_039792005.1 mRNA upstream 49133 15096335 ~ 15126770 (-) False atxn7l1
XM_039792008.1 mRNA upstream 49133 15096335 ~ 15126743 (-) False atxn7l1
XM_039792006.1 mRNA upstream 49133 15096335 ~ 15126743 (-) False atxn7l1
unassigned_transcript_1491 other downstream 984086 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1134493 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1263987 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2505611 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2944824 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 12801 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 15061 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 724036 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1701640 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2247920 17295122 ~ 17302198 (-) True G228465

Expression Profile