RNA id: TU309280


Basic Information

Item Value
RNA id TU309280
length 508
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G227949
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14774313 ~ 14774820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCGGAGATTGTcggagccgcggtggaggaagtactgaatctcagtacttaaataaaagtacaaataaccagagacatatttactttagtaaaagtagaaggtgtccactaccacaaacaaggcctggcttttaaaaaaaagttcctatcctaaccagcataaaacggaaatgtgttgttagaatcggaatgcggttggttttattcatggatgtattttattttctttaaccatgcaagtaagcaaataaagtgtgtgaagcagcgcaaatggggagatgtgaagaggtccagccaaataaataagatatgaacgcgtcttacgcagcctggcagaggagtaaacgacgctgtggagagaaatagatatagcaactttgatttaaaaacgggaataataaaaacaaacgttttcattttcacttttaccgggggctgtattaccgagggtcagcggcgctgcgcccgggctctggagcaccggagccggcttggatcagcggtgcc

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04610 Complement and coagulation cascades
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309279 lncRNA upstream 4066 14769977 ~ 14770247 (+) True G227948
XR_005638167.1 lncRNA upstream 226886 14500801 ~ 14547427 (+) True LOC120553441
TU309264 lncRNA upstream 252553 14521104 ~ 14521760 (+) True G227935
TU309224 lncRNA upstream 311839 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA upstream 311866 14462161 ~ 14462447 (+) False LOC120553353
TU309281 lncRNA downstream 18961 14793781 ~ 14796104 (+) True G227950
TU309302 lncRNA downstream 279885 15054705 ~ 15057478 (+) True G227970
TU309304 lncRNA downstream 285184 15060004 ~ 15060834 (+) True G227972
TU309300 lncRNA downstream 366392 15141212 ~ 15145198 (+) True G227969
TU309330 lncRNA downstream 379309 15154129 ~ 15166209 (+) True G227995
XM_039791871.1 mRNA upstream 20063 14750780 ~ 14754250 (+) True LOC120553461
XM_039791685.1 mRNA upstream 311853 14455325 ~ 14462460 (+) True LOC120553353
XM_039791477.1 mRNA downstream 393785 15168605 ~ 15199952 (+) True LOC120553256
XM_039791480.1 mRNA downstream 471338 15246158 ~ 15256323 (+) True fgl2a
XM_039791481.1 mRNA downstream 471338 15246158 ~ 15256323 (+) False fgl2a
XM_039791482.1 mRNA downstream 471478 15246298 ~ 15254589 (+) False fgl2a
XM_039792208.1 mRNA downstream 525702 15300522 ~ 15331178 (+) True lrrc17
TU309000 other upstream 769420 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 769464 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 939312 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 939982 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 941164 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 393784 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 1996238 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 1996242 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2144843 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 2815271 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile