RNA id: TU309361



Basic Information


Item Value
RNA id TU309361
length 470
lncRNA type intronic
GC content 0.50
exon number 1
gene id G228020
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14770498 ~ 14770967 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gctgcctcgccgcccggcctgccttccttcacagaccccggcctgctgtgaggtacttgaagctccgtcacgactggcagcccacagcactccatacccgcgcaaagtcaccgtctcttgggctaatgacaaccaaatgcccctgccctgacagagctccagggcctgcaactcccctcttcctgctagctaaatgcccggtgtatgtgagtgaggcCGGTCAGCGAAgctgttacgccagcaatctcttaccacaggtttcagttaatcttttaatgtgtgtaattataatgtgttgagttatttaaacaaacgattggggaaataaacgccgcttgtccgcgagtctcattgatagagcctgctgctggatgtagctctatcaatgagagctagctagcctcctcttagaattcctctgaaattcacaaatattcattaacttgaaatcggacaccgttgttagcttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309360 lncRNA downstream 251 14769998 ~ 14770247 (-) True G228019
TU309356 lncRNA downstream 127049 14635655 ~ 14643449 (-) False grm8a
TU309275 lncRNA downstream 134921 14634110 ~ 14635577 (-) False grm8a
TU309249 lncRNA downstream 344006 14424237 ~ 14426492 (-) False waslb
TU309250 lncRNA downstream 344006 14426118 ~ 14426492 (-) False waslb
TU309362 lncRNA upstream 3350 14774317 ~ 14774848 (-) True G228021
TU309363 lncRNA upstream 21278 14792245 ~ 14792469 (-) True G228022
TU309355 lncRNA upstream 276360 15047327 ~ 15053285 (-) False grm8a
XR_005638141.1 lncRNA upstream 398676 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 510499 15281466 ~ 15281669 (-) True G228063
XM_039791824.1 mRNA downstream 216633 14534878 ~ 14553865 (-) True gpr37b
XM_039791825.1 mRNA downstream 302091 14465755 ~ 14468407 (-) True LOC120553439
XM_039791691.1 mRNA downstream 319909 14426067 ~ 14450589 (-) True waslb
XM_039791677.1 mRNA downstream 364005 14401227 ~ 14406493 (-) True LOC120553349
XM_039791673.1 mRNA downstream 372719 14392392 ~ 14397779 (-) True LOC120553347
XM_039791868.1 mRNA upstream 22798 14793765 ~ 15047202 (-) False grm8a
XM_039791866.1 mRNA upstream 22798 14793765 ~ 15047202 (-) False grm8a
XM_039791867.1 mRNA upstream 22798 14793765 ~ 15047202 (-) False grm8a
XM_039792430.1 mRNA upstream 284508 15055475 ~ 15089983 (-) True znf800b
XM_039792003.1 mRNA upstream 323440 15094407 ~ 15126770 (-) True atxn7l1
unassigned_transcript_1491 other downstream 960819 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1111226 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1240720 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2482344 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2921557 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 289036 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 291296 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1000271 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1977875 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2524155 17295122 ~ 17302198 (-) True G228465

Expression Profile