RNA id: TU309362


Basic Information

Item Value
RNA id TU309362
length 532
lncRNA type intronic
GC content 0.43
exon number 1
gene id G228021
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14774317 ~ 14774848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttggttgccgtagatactgtatatatggggcaccgctgatccaagccggctccggtgctccagagcccgggcgcagcgccgctgaccctcggtaatacagcccccggtaaaagtgaaaatgaaaacgtttgtttttattattcccgtttttaaatcaaagttgctatatctatttctctccacagcgtcgtttactcctctgccaggctgcgtaagacgcgttcatatcttatttatttggctggacctcttcacatctccccatttgcgctgcttcacacactttatttgcttacttgcatggttaaagaaaataaaatacatccatgaataaaaccaaccgcattccgattctaacaacacatttccgttttatgctggttaggataggaacttttttttaaaagccaggccttgtttgtggtagtggacaccttctacttttactaaagtaaatatgtctctggttatttgtacttttatttaagtactgagattcagtacttcctccaccgcggctccgACAATCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309361 lncRNA downstream 3350 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 4070 14769998 ~ 14770247 (-) True G228019
TU309356 lncRNA downstream 130868 14635655 ~ 14643449 (-) False grm8a
TU309275 lncRNA downstream 138740 14634110 ~ 14635577 (-) False grm8a
TU309249 lncRNA downstream 347825 14424237 ~ 14426492 (-) False waslb
TU309363 lncRNA upstream 17397 14792245 ~ 14792469 (-) True G228022
TU309355 lncRNA upstream 272479 15047327 ~ 15053285 (-) False grm8a
XR_005638141.1 lncRNA upstream 394795 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 506618 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 515391 15290239 ~ 15290493 (-) True G228066
XM_039791824.1 mRNA downstream 220452 14534878 ~ 14553865 (-) True gpr37b
XM_039791825.1 mRNA downstream 305910 14465755 ~ 14468407 (-) True LOC120553439
XM_039791691.1 mRNA downstream 323728 14426067 ~ 14450589 (-) True waslb
XM_039791677.1 mRNA downstream 367824 14401227 ~ 14406493 (-) True LOC120553349
XM_039791673.1 mRNA downstream 376538 14392392 ~ 14397779 (-) True LOC120553347
XM_039791868.1 mRNA upstream 18917 14793765 ~ 15047202 (-) False grm8a
XM_039791866.1 mRNA upstream 18917 14793765 ~ 15047202 (-) False grm8a
XM_039791867.1 mRNA upstream 18917 14793765 ~ 15047202 (-) False grm8a
XM_039792430.1 mRNA upstream 280627 15055475 ~ 15089983 (-) True znf800b
XM_039792003.1 mRNA upstream 319559 15094407 ~ 15126770 (-) True atxn7l1
unassigned_transcript_1491 other downstream 964638 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1115045 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1244539 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2486163 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2925376 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 285155 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 287415 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 996390 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1973994 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2520274 17295122 ~ 17302198 (-) True G228465

Expression Profile