RNA id: TU309416


Basic Information

Item Value
RNA id TU309416
length 255
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G228066
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15290239 ~ 15290493 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctggtttgaccatggagatgggacatgctcgcttagcttcaccgcagttgtTTGCGTCAGCagccgtgggagagggtgtaaaagctatgtgtaaaagaggggtgtggcgatgacctcatcgatacggatccgtatttaccatccatacgaagccaaacgagagccgttttcggattttttcaccctgagacctggtttcaaaaaagtgcgttttcaggcagtgcgtttgcaggattcgtctggacggtcggccca

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309413 lncRNA downstream 8570 15281466 ~ 15281669 (-) True G228063
XR_005638141.1 lncRNA downstream 111284 15169643 ~ 15178955 (-) True LOC120553257
TU309355 lncRNA downstream 236954 15047327 ~ 15053285 (-) False grm8a
TU309363 lncRNA downstream 497770 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 515391 14774317 ~ 14774848 (-) True G228021
TU309417 lncRNA upstream 381 15290874 ~ 15291223 (-) True G228067
TU309426 lncRNA upstream 30340 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA upstream 34992 15325485 ~ 15331156 (-) True G228077
TU309475 lncRNA upstream 201861 15492354 ~ 15493417 (-) True G228109
TU309482 lncRNA upstream 204211 15494704 ~ 15510782 (-) False G228111
XM_039791479.1 mRNA downstream 32250 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA downstream 32251 15204448 ~ 15257988 (-) True ccdc146
XM_039791364.1 mRNA downstream 124007 15141912 ~ 15166232 (-) True nampt1
XM_039791363.1 mRNA downstream 149923 15128948 ~ 15140316 (-) True sypl1
XM_039792007.1 mRNA downstream 170878 15096335 ~ 15119361 (-) False atxn7l1
XM_039792209.1 mRNA upstream 40957 15331450 ~ 15338097 (-) True LOC120553603
XM_039792280.1 mRNA upstream 56506 15346999 ~ 15356337 (-) False LOC120553643
XM_039792279.1 mRNA upstream 56506 15346999 ~ 15356337 (-) True LOC120553643
XM_039791544.1 mRNA upstream 181782 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA upstream 181782 15472275 ~ 15491287 (-) False pphln1
TU309380 other downstream 201910 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 228810 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1480560 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1630967 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1760461 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 480745 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1458349 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2004629 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2540179 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2540179 17830672 ~ 18100995 (-) False tafa5a

Expression Profile