RNA id: XM_039792208.1



Basic Information


Item Value
RNA id XM_039792208.1
length 2164
RNA type mRNA
GC content 0.51
exon number 5
gene id lrrc17
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15300522 ~ 15331178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ggagagagagagagagagatagaggttGCAGAAGCAGCCAGTCACTCGTCCCTCACTCCAGGCTCTAAATTTATAGGCAGCCAGGCAGATTTTCTTGGCTTAGACGCAGCGCTCATGACAGGATTAGGAGCCGGGGACGCGGGACCAACCGGAGATCTGCAGGTCCTATTGGACGAGCCCGGGCCAGATTCTCTTCCTGCACAGCTGTGACCGGCCTCCCGTGTCCCGTCACACCAATCTTCCTACAACAGTCTTCCAAGGTTGACCTGATTACTGAGAggcctcccttcctctcccctCCCATCATGCATCTCCTCACCCCCATTCTCCTCTTGCTGCTCCTCCGATCAGCTGAGGCCCGGAGAGGCCCTCGGTCGGGGACTGTGGAGAGGGGCGCTGGGGGCCGTGTACGGGGCAGAGGCAGGGCCGGAGTGATGAGACGTCAAACTCAGGAGTGTAAGGAATACATGGAGGCAGGAGAGAAGTACCTGGACTGCCAGGACAGGCAGCTGACCACCGTGATGCAAGACTGGCCTAAAGATATTCACCACCTGCTGTTGGCAAGAAATAAGATTCAGGTTTTGAGGGACAACATGTTTTCCCAGTTCACCCAGCTGAAGAGCCTGGACCTCCAGCAGAACGACATCTCCATGGTGGAGGACGGGGCGTTCAGTGGCCTCTCCCAGCTCACCACCCTGCTCCTCCAGCACAATGGACTGAAAACTGCCACCGAGGAGGTCCTGCTCCCTATGCCCCGCCTCGTCTACCTCCGTCTCTATGACAACCCCTGGAGCTGCCACTGCCAATTGGACAGCCTGGTCAGGACCCTTCAGGTGCCTAGCAACCGCAACCTGGGCAACTACGGCAAGTGCGCGGAGCCCCAGTCGCTGAGGGGCCAGAAGCTGAGGAAGCTGAATGTGGACTCATTGTGTGCAAAAGACCAACAGGTGGACAGGAGGCCAGGGGGCAGAGAGGTGGGGCAGCCTCCTCCAATCAAAGTAAAGACAGAGGCCACGTCCATGTGCCACACCTACATATTCCCAAAACCTCTGCTGGACTGCAGCAACAAAGATTTGAATGACATGCCGTCTGACCTGCCATCTGACATAGTAAAAATGGATCTGTCCTGGAACACCATCAAACATCTCAGGCCCAAACAGTTCCTGCTGTCCAAAGACCTCAAAATGCTCAACCTTAGCGGCAACAGCCTGCAACATATAGACACAGGTGCATTCGCAGGCCTGCTGTACCTCCGTGAGCTTGACCTGTCCAACAACAGCCTCCATTACTTCCAGTACGGCGTACTCGAGGACCTCTACTTCCTACGGAAGCTCTCGCTGGAGAACAACCCCTGGATCTGCGACTACAACATCCACTACCTGATCTACTGGCTCAAGCACCACCCCGGCGTCTTCTACACTGGCCTGATCTGCTCCGAGCCACAGGAGTTCAGGGGCTGGCGCGTCGAGGATTATGTCAAGACCTACAATGGGGAATGTCCCATGGATAAACAAACTGGAGGGATGGATACAGGACAGGGGGGACAAGGGGGGACAGACAATGAGGCACTGGAGTTGGTGGCGGATATGGGTGATAGGCAGGGTGAGCGTTTACCTCGGCCCCTGAAAGAGAAGAAGCCCAACAGGTTTGAGATCATCAGGCTGAGTTAGAACGGAGGTGGATCAGATCAGACTGGTGTGGTTTAGTATGCAGGTCTGTGGAGAGGCTGAACAATGGATTAATAAAAGGTAGACTCAGTGATctgatgtttaaataaaaaatgtgatatgcataaaagtacaattttgggggaaaaaatcgttTGTCTTTTTAGTAATCAACATTTTCCATCTTGTGTGGgtaacaggaaaaaaaactcattttggGACATTTTTTGAAAAGATTATTCATTTGAATTTCATATTGTTTGGACATGTTTTGGAGATGCCATTtgagcttttgtttttttgttttgcaaccCATGTCTCTTTGAATTTCCCAAACAATCAACTGCAGGTGctcttatttttttctgttacagCCATTTTGATATAAGTTCAggatatacttttttttcttctaaagagtagtttggggcttttttgtattaatacatGTACAACTTTGTTTACCTGTTTTCTAGAAATAAAATTGGTTTTATTTG

Function


GO: NA

KEGG:

id description

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU309415 lncRNA upstream 10014 15290187 ~ 15290508 (+) True G228065
TU309334 lncRNA upstream 97481 15199075 ~ 15203041 (+) False LOC120553256
TU309330 lncRNA upstream 134313 15154129 ~ 15166209 (+) True G227995
TU309300 lncRNA upstream 155324 15141212 ~ 15145198 (+) True G227969
TU309304 lncRNA upstream 239688 15060004 ~ 15060834 (+) True G227972
TU309453 lncRNA downstream 140226 15471404 ~ 15471886 (+) False prickle1b
TU309478 lncRNA downstream 163511 15494689 ~ 15510679 (+) True yaf2
TU309479 lncRNA downstream 163511 15494689 ~ 15510679 (+) False yaf2
TU309500 lncRNA downstream 199953 15531131 ~ 15531439 (+) True G228119
TU309509 lncRNA downstream 346177 15677355 ~ 15680269 (+) True G228128
XM_039791480.1 mRNA upstream 44199 15246158 ~ 15256323 (+) True fgl2a
XM_039791481.1 mRNA upstream 44199 15246158 ~ 15256323 (+) False fgl2a
XM_039791482.1 mRNA upstream 45933 15246298 ~ 15254589 (+) False fgl2a
XM_039791477.1 mRNA upstream 100570 15168605 ~ 15199952 (+) True LOC120553256
XM_039791871.1 mRNA upstream 546272 14750780 ~ 14754250 (+) True LOC120553461
XM_039792506.1 mRNA downstream 7661 15338839 ~ 15345725 (+) True LOC120553796
XM_039792290.1 mRNA downstream 29751 15360929 ~ 15368119 (+) False pus7l
XM_039792289.1 mRNA downstream 29763 15360941 ~ 15368119 (+) False pus7l
XM_039792291.1 mRNA downstream 29765 15360943 ~ 15368119 (+) True pus7l
XM_039791539.1 mRNA downstream 110807 15441985 ~ 15471887 (+) False prickle1b
XR_005638140.1 other upstream 102692 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 1295629 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 1295673 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 1465521 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 1466191 13834221 ~ 13834331 (+) True trnal-caa_24
XR_005638118.1 other downstream 1439880 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 1439884 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 1588485 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 2258913 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 3198987 18530165 ~ 18531168 (+) False srr

Expression Profile


XM_039792208.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_039792208.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039792208.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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