RNA id: TU309426


Basic Information

Item Value
RNA id TU309426
length 1060
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G228075
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15320833 ~ 15345644 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAATAACAATACCATACTTGGCAAGAGTATATTGTATATTAGGCATTAATGGTTAAAGTGCACAGGTAGACATTGGATCTGCTGTGTCAGATGAAATTCATATGACAATATATCAGTCAAGGATGACATTTCAACCGCAGGCAGCTCATGCAGCAAGTCATTTTAGGAGTGATGTGGCATAAAGGCTTCTTCGGTGAGAGTGGCATCAGTCGGGACATTACAGTCTCTGCAAGAATATTGTTGACGCGTTTTCCTACAGGAGCCTCTCACAACCTGTCTGCAGTGGCCTTGCCAAAATGTCTCCAAACCTtgaaatcaaacttttgcaggCGAAATAGTTGAGGATTTAATGCATGTCTACTTAATGTGCAACCAAACAGAATCCCCTTTCCTCCTAGTGGGTATCATTTACCCACTAAATATGCCTTAATAAAAACTTAATGGAGAGATGAAGTTTCAAATATACATTGTGCATAACAAGGCATCAAGACATTCTGTTGTCCCAATGAGAGCTGTGGCTCATTCCGTCGTCCAACCTGATTATTTATCCAAGGAAATACATTgctcaataataaatacatggttATATTTCAatcaaagcactttgtaaacacTGTTTATGAAATGTGCTACATACGGgttattcatattattatttgttCAAAGATTATTGGTTTCTCTAATGCTGAAAATTCAATGAGTGAGTTTTAGACAAGTATGAATATTTAAATGTGTGCTTAAAAGAAGTTGGTCCAGTTGACAAGAGTTAAATTAAACCCATTAATTGATAAAGTTGTAGGTACAGTAGATGCAATTAGATTCATATGTCTTTCCAAAGACTCAGCGATGTATCCAGGTATAAAGGAAATGGACTTAATAATATCTGAATATTATCCAGATAAGACAACACTTACTGTAAATAACAAAATGCTGGGAATCGGGTCTAGCTACTCAAAGAAAACAGATGGCTGGTTAATGCTTGGTAAGATATAATAATTTCGAACATAATTTCAGATAcagtgccttgcgaaagtattcggcccccttgaacgtttcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309417 lncRNA downstream 29610 15290874 ~ 15291223 (-) True G228067
TU309416 lncRNA downstream 30340 15290239 ~ 15290493 (-) True G228066
TU309413 lncRNA downstream 39164 15281466 ~ 15281669 (-) True G228063
XR_005638141.1 lncRNA downstream 141878 15169643 ~ 15178955 (-) True LOC120553257
TU309355 lncRNA downstream 267548 15047327 ~ 15053285 (-) False grm8a
TU309475 lncRNA upstream 146710 15492354 ~ 15493417 (-) True G228109
TU309482 lncRNA upstream 149060 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA upstream 149351 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA upstream 154192 15499836 ~ 15510782 (-) True G228111
TU309501 lncRNA upstream 185487 15531131 ~ 15531439 (-) True G228120
XM_039791479.1 mRNA downstream 62844 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA downstream 62845 15204448 ~ 15257988 (-) True ccdc146
XM_039791364.1 mRNA downstream 154601 15141912 ~ 15166232 (-) True nampt1
XM_039791363.1 mRNA downstream 180517 15128948 ~ 15140316 (-) True sypl1
XM_039792007.1 mRNA downstream 201472 15096335 ~ 15119361 (-) False atxn7l1
XM_039792280.1 mRNA upstream 1355 15346999 ~ 15356337 (-) False LOC120553643
XM_039792279.1 mRNA upstream 1355 15346999 ~ 15356337 (-) True LOC120553643
XM_039791544.1 mRNA upstream 126631 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA upstream 126631 15472275 ~ 15491287 (-) False pphln1
XM_039791543.1 mRNA upstream 126631 15472275 ~ 15491287 (-) False pphln1
TU309380 other downstream 232504 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 259404 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1511154 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1661561 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1791055 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 425594 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1403198 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1949478 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2485028 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2485028 17830672 ~ 18100995 (-) False tafa5a

Expression Profile