RNA id: XM_039791538.1


Basic Information

Item Value
RNA id XM_039791538.1
length 3987
RNA type mRNA
GC content 0.50
exon number 8
gene id prickle1b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15441985 ~ 15471887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagacacacacatccactCACTCCCACACACTCACAGGGATCAGAGACACTCCAGATAGAGACGTCACCTCTCTGCCCTCTTCTTTTGCTCTTTGGACCTCGGAATTTTGGATCTCTTAATGAGCTGCTGCCCATCTGCGAAGTGAGTGAGAGTTGCATCTCTTCAGATTTCCCCCTTACAGCTGACGTTGACTTTAAAAAAGCCTGAGCCGTTGGGGGAATACTTCCTGGCTGAGTGGGATCTGGATCTGATTAGAGCGTGGATCCGTTAAGCTTGATGCTGCAGACATGTAGCCAGAGCTGGAGCAACTGTGAGACCAGGGGGATTGTGGAAGTGAATGAAAGCTTTATGcgaagatggaaagagagatgCTTTCCCGGGAGCGCCCGTGTGTGATGAACCTGGAGCGCAGCGAAAGAGGGGAGCGCCCTTCTCCCCGCGGCCCGGAGATGGAGCCTCATACTGGGGGAAAGATGGGGAAGATATCTGTGGGCTTCCAGAGGAGCTCCACCTCAGATGATGACTCTGGATGTGCGTTGGAGGAGTATGCGTGGGTCCCACCGGGACTCAGGCCTGAGCAGGTCCAGATGTATTTCTCCTGTCTGCCAGAGGAAAAGGTGCCGTACGTCAACAGCCCCGGAGAGAAGCTCAGGATCCGACAGCTCCTCTACCAGCTACCGCCGCATGACAACGAGGTGCGTTACTGCCACTCTCTGAcggaggaggaaaagagggagaTCCAGATGTTCAGTGcccagaggaagagggaggcaCTGGGGAGAGGAACACCCAAGATCCTGCCCCGAGCTCTGCACCATACCCGGTGTGAAAATTGTGGCGGAGGCATCAATGGAGGGGAGATGGCAATTTTCGCCTCCAGAGCAGGACCGGGCCCCTGCTGGCACCCAGCGTGCTTTGTGTGCGCCACATGTCAAGAGCTGCTGGTGGATCTGATATATTTCTACCAAAATGGCAAGATTCTCTGTGGACGACACCATGCTGAGCTTATAAAACCACGGTGCTCTTCTTGTGACGAGATCATCTTTGCCGATGAGTGCACTGAAGCAGAGGGTCGTCACTGGCACATGAAGCACTTTGCCTGTTTTGAGTGTGGGACGATGCTAGGGGGGCAGCGCTACATCATGAAAGATGGCCGGCCCTACTGTACTGGCTGCTTTGAGTCATTGTATGCAGAGTACTGTGAGGCCTGTGGTGAAAACATTGGTGTTGACCATGCCCAAATGACCTATGAAGGTGTACACTGGCATGCCTCAGACCAGTGCTTCTGTTGTGCCCAGTGCAAGACATCCTTGCTGGGCTGTCCCTTCCTGCCAAAGCAGGGTCGCATTTATTGCTCAAAGGCCTGCAGTCAGGGAGAAGATATTCATACCTCCGACTCGTCTGATTCGGCCTTCCAGTCTGCCCGCTCACGTGAATCACGGCGCAGTGTGCGCATGGGGAAGAGCAGCAAGCCTGCCGAACAGTGGAGACAGTCACAGCTGTTTAACCCCCCAGCTGCCGTCCCCTCATTTGAGTACAAGTTTGGAGATGGAGAGGGTGAAGGAGATGAAGATGCAGATTCCAACATAGGTATTGTAGGGCGCAAGCTGGCCCGTCTCGGCCTGGAAGAAGAGAGGTTCTGGAGGGAGCGGGAGGAGCAGGATGCTGGTGGAGAGGAGGATCCAGAGGAGTGGGCCCAGCATGAGGACTATATGACTCAGCTCCTTCTCAAGTTTGGTGACCGCGGGATGTTACACCAACTTCAGCAGCCATCCCTAAAATCTCCCAGCCCCAGCAGTGACAGAAACAGGCTAATAAGTGTCTCTGACCCCTGGCTTAAGCCTGATACTACATCTTTGGGGGTTACCGCCTCCTCTCCCACCCCTACCAGTCCCACCCAGAGCCAGACTTCCAATCAATCCCGAGCCAACAGTCTTAGCCCTGGACTGATGAGCAAGAAGCACCTGCCTGAAATGTACTGGGCCCAGTCCCAGGACGGGTTGGGAGACTCAGCCTATGGGAGTCATCCAGGTCCTGCCAGTGCCAGAAAGATCCAAGAGCTGGAGTTGGACCAGGATCAGGACCAATCTGGGACAGGAAGACGGGCATTCTGGACAGACACCAGGCAGTGGTATGAAGACTCCCTTGAGTGCATTGCTGATGAGCTGAGGAAAGCCGATCAGGGTGCTGGAGACTCCATGGACTCCCTGGCGCTCTCAAACATCACTGGTGCATCAGTGGATGGAGATGGCAGAGATAGACCTATAGTCTACAACCTTGCCATGCAGGATCCCACGGTGGCAGATGACTGCGAGAACATGAGCAACATGGGAACCTTTAATTCCTCTCATCTGCACCACAGTGCCAACTCTCTCAACCTTAACATGGAGAAGGGAGACGTGGAGGAGATAGCATTGGCAATGAGGGGAGGCACACCAGGAGGACTTCTCTCATTGTCCCCACATTCGGAgggcctccctccctcatttgTCCATGCCCCAGCTCTGAGGAGGAGCAAGTCCCAGTCCAGGCCTCCTCAGATGGTCAAGTTCTCAGAAGACACCGTGGACAATGGATATAATGATGGGTTTGATGTCAATATTAGAAAGCATCCCATGAGTGAGAAGCCACAGCggagggcctactgcacagatGAGATGAGCCGAGAAAGAAGCCGCCCACTGAGCCACCACGGGCGCAGGCAGCACCACCACCGGCACAACAGGAGCCGCAGAACCCGCTCAGACAACAACCTTCACATGGTGCCTTTGGAGAAAGCACAGAGGCCGTATGAGCCCCAGCAGCAGGGTCTGGTAAACCCTCCTTGTGGTGCAATGCTCCTACAGCATCCTGCACACAGGCTGCCCTTGGCCTTCTCCCAAACCCAATCTGACTATATGCTTCAGGGCTCAGCTCAAGGAAACCCACGACTTGAGCATTTCATGGGTCTCTACAGAGATGAGGATGACTGTTGCTCTACTTGCTCTTCCTCATCATCGGACTCTGAGGAGGAGGGCTATTTCCTGGGCCAGCCAATCCCTCAGCCTCGAGCGGCTGGGCGCTACTACGCTGAGGACTACCCTACAAGGGTTACAGCCCTCCCTTCCCAGAGCCACGGCTCACAGACTGGTCGCAGAAAGAGCCACCGCTCCAAAAATTGTATCATCTCTTAACAGCTCGGAGTGCATTTACATCATAGCCTGCACTACACCAAGCAATAAAGTCAGATTTTCTGATCATATGATGATTTTTGCGGATCAAATCTGGATTTAGGCAGTTTAAAGCAACCCATTATGCCCTAACAGAAGGTGCATTGCCAAATGTCAAGATGCATATCATATTTAGGTCCAAATCtacttttttgtgtatgtgcaaACTTCTCCTATATACTGATGCAGAGTTGGTAGAGTGGAAACATTAAACTTTTTTATTTCCGCATTtgccaatacgtttttttttttaaatgtttaatgttcAGTTAAAGTTTTGCAGCAATATCTTTGTGTGCATTAAAATGGCAATACATTGTACACAGAGGTTGATAAAGTAGAAAATAGAAATCaaacaaataattatttaatGCATAATAGTACAAAATGATAATGTATATACTAAGTTAAGATTTTAATACTGGTATTTTTATATCCGTGGTTTAAAGATGTTTCTTTTGAAGtgtatattaaaaaaaggttgtaaTGGTAAACTAACAGACCTCATTAATATTTTATGAGAAACAACAAAGAAGGTGCCACTTCACAAACTGTGTTCTTCACAGTAAAGTGCCATGTTACTCTGTAACAATGTCTATTATAACATATATTCCACAATGCTCACTATTGGTGtacaaaatattaaaagaatGGCAATTACACCTGCATTTTCCATTTTCAGCTGATCTGTTCACTACCCCTTGCTCTAACATAACcagaaaaaaatgctttgtGATGTAAAGATGCTTGTAATAAATACTTTTTCTCCTCTTAAA

Function

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309418 lncRNA upstream 127290 15300536 ~ 15331134 (+) False lrrc17
TU309415 lncRNA upstream 167916 15290187 ~ 15290508 (+) True G228065
TU309334 lncRNA upstream 255383 15199075 ~ 15203041 (+) False LOC120553256
TU309330 lncRNA upstream 292215 15154129 ~ 15166209 (+) True G227995
TU309300 lncRNA upstream 313226 15141212 ~ 15145198 (+) True G227969
TU309478 lncRNA downstream 22802 15494689 ~ 15510679 (+) True yaf2
TU309479 lncRNA downstream 22802 15494689 ~ 15510679 (+) False yaf2
TU309500 lncRNA downstream 59244 15531131 ~ 15531439 (+) True G228119
TU309509 lncRNA downstream 205468 15677355 ~ 15680269 (+) True G228128
TU309512 lncRNA downstream 208486 15680373 ~ 15681491 (+) True G228130
XM_039792290.1 mRNA upstream 90305 15360929 ~ 15368119 (+) False pus7l
XM_039792289.1 mRNA upstream 90305 15360941 ~ 15368119 (+) False pus7l
XM_039792291.1 mRNA upstream 90305 15360943 ~ 15368119 (+) True pus7l
XM_039792506.1 mRNA upstream 112699 15338839 ~ 15345725 (+) True LOC120553796
XM_039792208.1 mRNA upstream 127246 15300522 ~ 15331178 (+) True lrrc17
XM_039791545.1 mRNA downstream 19396 15491283 ~ 15493423 (+) True zcrb1
XM_039791546.1 mRNA downstream 19403 15491290 ~ 15493423 (+) False zcrb1
XM_039791822.1 mRNA downstream 22790 15494677 ~ 15506893 (+) False yaf2
XM_039791823.1 mRNA downstream 22793 15494680 ~ 15511178 (+) False yaf2
XM_039791820.1 mRNA downstream 22794 15494681 ~ 15511178 (+) False yaf2
XR_005638140.1 other upstream 260594 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 1453531 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 1453575 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 1623423 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 1624093 13834221 ~ 13834331 (+) True trnal-caa_24
XR_005638118.1 other downstream 1299171 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 1299175 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 1447776 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 2118204 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 3058278 18530165 ~ 18531168 (+) False srr

Expression Profile