RNA id: TU309475


Basic Information

Item Value
RNA id TU309475
length 602
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G228109
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15492354 ~ 15493417 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCATTAAGAAACAAAGTTTTATTGACGGACTGATTTTGAGAAACACCACATATGCTCACTCAATCAATCCAACAACAGGAAATGTCTTAGTTACAAAAAGAGGAAAATGTAAATTCATCAGTGTCAACGAAAGCATCCCCACtataatacaatataatttACAAACATAAAGCAATATTTGACAAACGACTTATGTCCAAGCTgtgtatcattattattattattattattagtcacTAAGCTCCTCCTCGTCACTGAAGTATGTACTCTTTTTGATCCTTGGTTTCTTAGAGTCTGAGGATGTTGAAGCGTGAGCACCTTCCTCTTGAGACAAGCGTGCCTGCTTCTTCTGTGTTTCGTTCTCTTCCTCAATACGGGCTTGCTGAAAAGCTATTGCTTGGCTCAGACTATCTAAGGTTGGgtcctctccctcttcttcactttcttcttcttcttcaACATGCTCAGGTTGGTCagcctttttcttctttttcttttccttcttctttggAGGTTCCCTCTCTCCCAGAATGTTTTTGGGGCATGCGTAGCTCAAATGACCTGTATCCCCACATTCGTAACATTTGGTCTTGTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309426 lncRNA downstream 146710 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA downstream 161198 15325485 ~ 15331156 (-) True G228077
TU309417 lncRNA downstream 201131 15290874 ~ 15291223 (-) True G228067
TU309416 lncRNA downstream 201861 15290239 ~ 15290493 (-) True G228066
TU309413 lncRNA downstream 210685 15281466 ~ 15281669 (-) True G228063
TU309482 lncRNA upstream 1287 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA upstream 1578 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA upstream 6419 15499836 ~ 15510782 (-) True G228111
TU309501 lncRNA upstream 37714 15531131 ~ 15531439 (-) True G228120
TU309647 lncRNA upstream 722698 16216115 ~ 16224149 (-) True G228221
XM_039791544.1 mRNA downstream 1067 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA downstream 1067 15472275 ~ 15491287 (-) False pphln1
XM_039791543.1 mRNA downstream 1067 15472275 ~ 15491287 (-) False pphln1
XM_039791540.1 mRNA downstream 1067 15472275 ~ 15491287 (-) True pphln1
XM_039791541.1 mRNA downstream 1378 15472275 ~ 15490976 (-) False pphln1
XM_039791123.1 mRNA upstream 60808 15554225 ~ 15591288 (-) True pdzrn4
XM_039791365.1 mRNA upstream 182210 15675627 ~ 15689322 (-) True cntn1b
XM_039791366.1 mRNA upstream 196688 15690105 ~ 15746414 (-) True nrcama
XM_039791836.1 mRNA upstream 257647 15751064 ~ 15760526 (-) False pnpla8
XM_039791835.1 mRNA upstream 257647 15751064 ~ 15760494 (-) False pnpla8
TU309380 other downstream 404025 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 430925 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1682675 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1833082 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1962576 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 277821 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1255425 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1801705 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2337255 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2337255 17830672 ~ 18100995 (-) False tafa5a

Expression Profile