RNA id: XM_039791823.1


Basic Information

Item Value
RNA id XM_039791823.1
length 3820
RNA type mRNA
GC content 0.43
exon number 3
gene id yaf2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15494677 ~ 15511178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAGTCACGTGATCATTTCCCAAGCGGAGTTTCCACGACAGCTGGAAGCCGAGCGGCACAGGCGCATCGCTTCTTTGCTAAAATTATTGGAAATAACAAGACTTCTGCTCGTCTCAGCACCTCCAGATAAACCCTGGTCTGGCATGGGCGACAAGAGGAGTCCCACAAGGAAGCCTCGTCCCGTCTCCCAGCTCGTCTCGCAGCAGCAGGTAACGCAGCAGTTTGTGTTGCCCTTGCAGCCCaaaaaggagaagaaggagagagtagagagggagaagagcgACAGAGAGCCGGCGCTCAAGAAGAACAGTCACAAGAAGATGAGGCCGAGGTTAAAAAACATTGaccggagcagcgcccagcacCTGGAGGTGACGGTTGGGGACCTGACAGTCATCATAACGGACTTTAAGGAGAAGGCCAAGCCCTCGTCCACCTCGGCTACGCCATCCAGCACCGCGTCTACGGCCGACCACCACAGCCAGAACGGCTCCagctcagagaacacagagaagGGGCTTTCCCGCTCCTCCTCTCCCAGAGGAGAGGGGAGCTCGGTCAACGGAGAGTCCCACTGAGTCACCCGCCCTCGAAATCTCCCTCTGCCTCCAACCCCATCTCATCTGCAAGCCCACAGGTCACTGGTGGGACACCCTGCCTCGACTTTAGAGCTGCACATTATTGACTAAAACagttttgctttctttcttttggatATTACAATTTGGCGATTTTAAATCAGTTTAATATTCTCCACAGCAGTGGAATCCTGCATTTAGAAAGCAATATAAAAAGACCTTTTTGCTCCATCTTTGAAGTTTTTAGTGACCTACATTTTCACTTGGACATTTAGTGTAATCGAAAGGATCCCGCACGCTGTCCAAACCTTGCTACAAGAACATTTACTAAGACAATTTTATTTTGACAAAGAACTTCCTCAGAACAGATCTGAGATGTCTGAATAAATGTTTGGACAAGCTTAATGGCCCTGTGCGGTTCCTTTCGGATGCACCTGCCTGTCCaggtgtttctttttcttttgtttttatactTTTGTTAAACGAAATGTGCAGCCCCCACCCTCGACATTACCTTCAGCGGCCAGCAGAGTGACCTATTCTTCCCCCATGTGGAATCTTCATCCTCTGTCTGGAATCTTTACCTAGCCGTTATAAACCTGAACCACCTATTACGCGCTCTCAGTGTCCCTACACTGAATCTTCAACCTCTCAGCAAACCTTTGCTCCTGCACTCGATTACTCCAAGCTTTTACTTGTGGACTGCCTCTGCTGTGGAGTGACTTTTGACATAGCACAGCGGCTGTACTCTGACTGGCACCGTTTGGTGTTTTGGGGTAATGTTTGGAGCAGGTTGTTTAGTTCAGGTAATGCTCGTTATGTCCATATAAAAAGGGACATTGGGCAGGTTTTGATAAAAGCCCTCTTTTAAATGGTGCGGGAACATATAGTTTGTGATTTTAAAAGGAAAATGccggtgttttttgttttcagtttgtgCCATTGATCTACGTCTACATGTCATGTTGGAGATAAAAAAATCAAGGTTTTGTTTTTCTATCTTTGCAGCCATTAATTTTGTACCACTAACTTGCATTAAGTGATATTTTTGATATGTTAAAAGCTAAATATATTGAGAAGTAGCAATTAGCAACCCAAAAACTGCAGTCCCTCAAatggccacttgaggctggctGGTGGTTTATTCTATAGCTAATTTCCCTATTCATGACAACTGTACGGAGAGTGGATTTTTATATTACTGGTCCATTTAAATTATATAAGTTATGCATGATTAAGGGCTTGGCTGCCAGGTGACCGGTGGGTGCCATCACAGGTGGCTAGCTCAGCAACCAGGCTTCTTCGGCCCGCCTCAGCTCCACCTCTTGCCCATTTTTGGATTAGCCGGCAGCAGGCAGAGTCAGGCATTGCCAAGATGGCGAAGGCCGCACTAAGCTTCACAATGGCTCTTCAGGAATCTGCTGTATGTGTGAGGTCACAGAGGCTACGTCCATGTTCTATACAGTCTGTGGTTCTATGGACCCTCACATAGACAAACCATAAACTATCCATGTTCAGCAAACCAGCTCAAACAAGCTGTTAACACTATCTGGCCAGCATGAAATCACAGAAGATTGAAGTTTCTGGAAAAGAAAGTCTTTAAATGAGTCAATATTGTGCTAGTATTGGTCAGAAGACCAAAAACACTAATGCAAAGGGATTTTAATGTTGGTATCTGTCTGCTAGATGTGCAAGTAGGCTGCTAAAGGTACAGCTAAAATCCTGTCTCTCAGGGCTTTGTTTCTTTGAATTGATTCTGCAGTCTTGCTGTACCCTCCTGCTATCAAAAAGATCACTTAATGCAACTTTAAGAATTACCTAAGCTTTGTAATAATTTTCAGTCACACTTTATCTGTCACATTGTAAGTACATGATGTACATGGCTCCCACagaatgaaatatatatatacgctCTTCCACGttcttcatacatcatagttCTGCTTGCATTTGGCAtgcttattttttcttttctttgtttcagagatgaaaaaaaagaagagttgATGGCAAAATGTCAACTAAATGTAGATGATAGTTAAGGGACTGTCACTTTAAATGACACCGGCATTCTCCTTTTAATCTCTGCTGCACACACAGGGCTGCACCTGCTCAGCGTCACAGTGGAAAACCAGAGGGTGCTCATGCTGTTCTGCCCCCACTGTGAACCCAGTGTGGAGACTGCATGGTGCTTCCACAACAGAAAAGGAGCTTTGACTTCTGGACGTGCAGTTATCAACTGCATAAGGTGATGGACTTCAGAAACTGTTTAAATTCCTCCATTTTGACGTAGCAAAGTGGGGGAGCTTTAGAATATACTAAACCCCCAGCAGAACAACTATAGATCAACCTAACTACACAATAATGTATGAAACCTGTAGAATACTACACAGATAAAATGGATATTTCTAAAATATTGTACTACAATGTTTTGATGTGGTTGTATTATCCATCATAGCAGTGTTATAGTTGAGATTTTTACTTTAACattttagcacagatcctgagAACTGTCATGGCATGATAATATTATGGTCTCTGTATATTGTGGGACAGGCTATGTCTCTTAGTTTGTTAGCATTGTCATATGTGTCAGAGATCTCATAGGTTCACCACACTAGCTGGGACTAGCTGGGGGGACTCGTGAGAAATGTTTGGATGGACGTTTGTTATTTGGTTGTGGCAAAAATGGAAAGACACTTAAAAACATGTTGGTTGTCACCTGttgatattattttgttttgctttgccaTGCTCAAATTGTTTTGAAATGTGTGAACTTGTTTATTACATGTCTGaataagaaaataagaaaattcAAACAAAAGAAATCATTTTACTTTTTGTAATTAGGTGCATGCATTGCTTACACTTTTGTGTTGTCACTGGTTTGCTAATCTAGGCTTTTTCTAAGCAGAGGAGGAgtgcttgttgtgttttcagcTCCATCTGGTGAACGACTTAACTGCTACTTATCCTCAACACAGAACCATAGACACAGAACATGCAGGCTTACAGATCAGGCCCATAATGCAACTCTGCATACATTGAAAATGGTGAATATCCATGTAATGACATAAgtatataggcctacagtatTTATGAGCATAAGGTATGGTTTACACACTAACAACCACTACATCAGTCAATAACCTAATTTTCCCACACTAAATGAAAATGCAGTTGACGGTCAGGTCTGTTCTAGTGGAGCAACATCAATAAAGACGAATAAAGCCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309453 lncRNA upstream 22794 15471404 ~ 15471886 (+) False prickle1b
TU309418 lncRNA upstream 163546 15300536 ~ 15331134 (+) False lrrc17
TU309415 lncRNA upstream 204172 15290187 ~ 15290508 (+) True G228065
TU309334 lncRNA upstream 291639 15199075 ~ 15203041 (+) False LOC120553256
TU309330 lncRNA upstream 328471 15154129 ~ 15166209 (+) True G227995
TU309500 lncRNA downstream 19953 15531131 ~ 15531439 (+) True G228119
TU309509 lncRNA downstream 166177 15677355 ~ 15680269 (+) True G228128
TU309512 lncRNA downstream 169195 15680373 ~ 15681491 (+) True G228130
TU309521 lncRNA downstream 178730 15689908 ~ 15699902 (+) True G228136
XR_005638130.1 lncRNA downstream 210346 15721524 ~ 15722242 (+) True LOC120553205
XM_039791545.1 mRNA upstream 1257 15491283 ~ 15493423 (+) True zcrb1
XM_039791546.1 mRNA upstream 1257 15491290 ~ 15493423 (+) False zcrb1
XM_039791539.1 mRNA upstream 22793 15441985 ~ 15471887 (+) False prickle1b
XM_039791538.1 mRNA upstream 22793 15458424 ~ 15471887 (+) True prickle1b
XM_039792291.1 mRNA upstream 126561 15360943 ~ 15368119 (+) True pus7l
XM_039792224.1 mRNA downstream 671 15511849 ~ 15520901 (+) True gxylt1b
XM_039792223.1 mRNA downstream 914 15512092 ~ 15521235 (+) False gxylt1b
XM_039792431.1 mRNA downstream 248133 15759311 ~ 15759832 (+) True akap14
XM_039791846.1 mRNA downstream 251615 15762793 ~ 15764738 (+) True avpr2l
XM_039791849.1 mRNA downstream 258834 15770012 ~ 15772705 (+) False LOC120553452
XR_005638140.1 other upstream 296850 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 1489787 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 1489831 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 1659679 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 1660349 13834221 ~ 13834331 (+) True trnal-caa_24
XR_005638118.1 other downstream 1259880 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 1259884 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 1408485 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 2078913 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 3018987 18530165 ~ 18531168 (+) False srr

Expression Profile