RNA id: TU309483


Basic Information

Item Value
RNA id TU309483
length 4104
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G228111
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15494704 ~ 15510782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAAGTAAAATGATTTCTTTTGTTTgaattttcttattttcttattCAGACATGTAATAAACAAGTTCACACATTTCAAAACAATTTGAGCAtggcaaagcaaaacaaaataatatcaaCAGGTGACAACCAACATGTTTTTAAGTGTCTTTCCATTTTTGCCACAACCAAATAACAAACGTCCATCCAAACATTTCTCACGAGTCCCCCCAGCTAGTCCCAGCTAGTGTGGTGAACCTATGAGATCTCTGACACATATGACAATGCTAACAAACTAAGAGACATAGCCTGTCCCACAATATACAGAGACCATAATATTATCATGCCATGACAGTTctcaggatctgtgctaaaatGTTAAAGTAAAAATCTCAACTATAACACTGCTATGATGGATAATACAACCACATCAAAACATTGTAGTACAATATTTTAGAAATATCCATTTTATCTGTGTAGTATTCTACAGGTTTCATACATTATTGTGTAGTTAGGTTGATCTATAGTTGTTCTGCTGGGGGTTTAGTATATTCTAAAGCTCCCCCACTTTGCTACGTCAAAATGGAGGAATTTAAACAGTTTCTGAAGTCCATCACCTTATGCAGTTGATAACTGCACGTCCAGAAGTCAAAGCTCCTTTTCTGTTGTGGAAGCACCATGCAGTCTCCACACTGGGTTCACAGTGGGGGCAGAACAGCATGAGCACCCTCTGGTTTTCCACTGTGACGCTGAGCAGGTGCAGCCCTGTGTGTGCAGCAGAGATTAAAAGGAGAATGCCGGTGTCATTTAAAGTGACAGTCCCTTAACTATCATCTACATTTAGTTGACATTTTGCCATcaactcttcttttttttcatctctgaaacaaagaaaagaaaaaataagcaTGCCAAATGCAAGCAGaactatgatgtatgaagaaCGTGGAAGagcgtatatatatatttcattctGTGGGAGCCATGTACATCATGTACTTACAATGTGACAGATAAAGTGTGACTGAAAATTATTACAAAGCTTAGGTAATTCTTAAAGTTGCATTAAGTGATCTTTTTGATAGCAGGAGGGTACAGCAAGACTGCAGAATCAATTCAAAGAAACAAAGCCCTGAGAGACAGGATTTTAGCTGTACCTTTAGCAGCCTACTTGCACATCTAGCAGACAGATACCAACATTAAAATCCCTTTGCATTAGTGTTTTTGGTCTTCTGACCAATACTAGCACAATATTGACTCATTTAAAGACTTTCTTTTCCAGAAACTTCAATCTTCTGTGATTTCATGCTGGCCAGATAGTGTTAACAGCTTGTTTGAGCTGGTTTGCTGAACATGGATAGTTTATGGTTTGTCTATGTGAGGGTCCATAGAACCACAGACTGTATAGAACATGGACGTAGCCTCTGTGACCTCACACATACAGCAGATTCCTGAAGAGCCATTGTGAAGCTTAGTGCGGCCTTCGCCATCTTGGCAATGCCTGACTCTGCCTGCTGCCGGCTAATCCAAAAATGGGCAAGAGGTGGAGCTGAGGCGGGCCGAAGAAGCCTGGTTGCTGAGCTAGCCACCTGTGATGGCACCCACCGGTCACCTGGCAGCCAAGCCCTTAATCATGCATAACTTATATAATTTAAATGGACCAGTAATATAAAAATCCACTCTCCGTACAGTTGTCATGAATAGGGAAATTAGCTATAGAATAAACCACCagccagcctcaagtggccatTTGAGGGACTGCAGTTTTTGGGTTGCTAATTGCTACTTCTCAATATATTTAGCTTTTAACATATCAAAAATATCACTTAATGCAAGTTAGTGGTACAAAATTAATGGCTGCAAAGATAGAAAAACAAAACCTTGATTTTTTTATCTCCAACATGACATGTAGACGTAGATCAATGGcacaaactgaaaacaaaaaacaccggCATTTTCCTTTTAAAATCACAAACTATATGTTCCCGCACCATTTAAAAGAGGGCTTTTATCAAAACCTGCCCAATGTCCCTTTTTATATGGACATAACGAGCATTACCTGAACTAAACAACCTGCTCCAAACATTACCCCAAAACACCAAACGGTGCCAGTCAGAGTACAGCCGCTGTGCTATGTCAAAAGTCACTCCACAGCAGAGGCAGTCCACAAGTAAAAGCTTGGAGTAATCGAGTGCAGGAGCAAAGGTTTGCTGAGAGGTTGAAGATTCAGTGTAGGGACACTGAGAGCGCGTAATAGGTGGTTCAGGTTTATAACGGCTAGGTAAAGATTCCAGACAGAGGATGAAGATTCCACATGGGGGAAGAATAGGTCACTCTGCTGGCCGCTGAAGGTAATGTCGAGGGTGGGGGCTGCACATTTCGTTTAACAAAagtataaaaacaaaagaaaaagaaacacctGGACAGGCAGGTGCATCCGAAAGGAACCGCACAGGGCCATTAAGCTTGTCCAAACATTTATTCAGACATCTCAGATCTGTTCTGAGGAAGTTCTTTGTCAAAATAAAATTGTCTTAGTAAATGTTCTTGTAGCAAGGTTTGGACAGCGTGCGGGATCCTTTCGATTACACTAAATGTCCAAGTGAAAATGTAGGTCACTAAAAACTTCAAAGATGGAGCAAAAAGGTCTTTTTATATTGCTTTCTAAATGCAGGATTCCACTGCTGTGGAGAATATTAAACTGATTTAAAATCGCCAAATTGTAATatccaaaagaaagaaagcaaaactGTTTTAGTCAATAATGTGCAGCTCTAAAGTCGAGGCAGGGTGTCCCACCAGTGACCTGTGGGCTTGCAGATGAGATGGGGTTGGAGGCAGAGGGAGATTTCGAGGGCGGGTGACTCAGTGGGACTCTCCGTTGACCGAGCTCCCCTCTCCTCTGGGAGAGGAGGAGCGGGAAAGCCCcttctctgtgttctctgagctGGAGCCGTTCTGGCTGTGGTGGTCGGCCGTAGACGCGGTGCTGGATGGCGTAGCCGAGGTGGACGAGGGCTTGGCCTTCTCCTTAAAGTCCGTTATGATGACTGTCAGGTCCCCAACCGTCACCTCCAGgtgctgggcgctgctccggtCAATGTTTTTTAACCTCGGCCTGAGTGAGTAAGAAATAGTTGGGGAGAGTAAGAGAaacatataaaaagaaaagaaaaaaaaaactgagaaagTATTTTAAGGCTATTTCTTTGCTAACAAACTCCTAAACTGTCTATCTtcaagaatatatatatatatatttttttttgcaacatttcGGTGCTAGAACTTGAATCAGGCAAAATGATGCAACCACACTACTGCCCTTCTGCTCAAAAACCCTATGACCCGGTTAAGCCCCAGGATCCCTGTTACTCATCTAGACTGCCATGGAAGTGTGCCCAAGACAGACAAAATGTCAAATCGTGTTCATGTAGAAAATAACTAATTAAAATAACGAACCAACAAGCCCCCAAGGGAGACAATGTTGCTTAATCCTACTGGGAAAGGTAACTCTAAAAGGTAAACACCCTTGATGCCCCACACCAGGCACAAACTGTTTAGTTAACTCAGCCTCTATTGTTTTCTACAATTCCCTTGCTTTCCCACCCTGAGACACTCAAATGTTTCACAACCATCACAGTTTTGTTTGCTGAACTTCCTCCTGTTTCAGCAAGTACAACTGACACTCAACGCCCAATACTAGGTATCTACTGTTACTGAAAACACACCTTTAAACCACTCGCACAACCATCTCATTAGTTGAAACAACAAAACCAACACTGACTAGGCTCATGAACTTACTCAAGGCAGaagagaaagtgaaaaataaaccaGGAGGGATCCTGGACGAGCCCCCATTTGTTACAAGTTGGCTCCttcttgcaaaaaaaaaggggaagctCCACAAACGTGACTGCGAAGGGCTTTATTCAGCCAAACTACAGATTACCATAAACATCAAGAAAAACAtttccatgtttgtttttttatgtttaatatcAGTAGTGCCAGGAATGTATGGGTGAGAGTatcatgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtatgtgtgtatatatgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309475 lncRNA downstream 6419 15492354 ~ 15493417 (-) True G228109
TU309426 lncRNA downstream 154192 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA downstream 168680 15325485 ~ 15331156 (-) True G228077
TU309417 lncRNA downstream 208613 15290874 ~ 15291223 (-) True G228067
TU309416 lncRNA downstream 209343 15290239 ~ 15290493 (-) True G228066
TU309501 lncRNA upstream 20349 15531131 ~ 15531439 (-) True G228120
TU309647 lncRNA upstream 705333 16216115 ~ 16224149 (-) True G228221
TU309734 lncRNA upstream 1025236 16536018 ~ 16536293 (-) True G228283
TU309741 lncRNA upstream 1235961 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 1314047 16824829 ~ 16831239 (-) True G228295
XM_039791544.1 mRNA downstream 8549 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA downstream 8549 15472275 ~ 15491287 (-) False pphln1
XM_039791543.1 mRNA downstream 8549 15472275 ~ 15491287 (-) False pphln1
XM_039791540.1 mRNA downstream 8549 15472275 ~ 15491287 (-) True pphln1
XM_039791541.1 mRNA downstream 8860 15472275 ~ 15490976 (-) False pphln1
XM_039791123.1 mRNA upstream 43443 15554225 ~ 15591288 (-) True pdzrn4
XM_039791365.1 mRNA upstream 164845 15675627 ~ 15689322 (-) True cntn1b
XM_039791366.1 mRNA upstream 179323 15690105 ~ 15746414 (-) True nrcama
XM_039791836.1 mRNA upstream 240282 15751064 ~ 15760526 (-) False pnpla8
XM_039791835.1 mRNA upstream 240282 15751064 ~ 15760494 (-) False pnpla8
TU309380 other downstream 411507 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 438407 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1690157 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1840564 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1970058 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 260456 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1238060 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1784340 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2319890 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2319890 17830672 ~ 18100995 (-) False tafa5a

Expression Profile