RNA id: TU309662


Basic Information

Item Value
RNA id TU309662
length 212
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G228236
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16266339 ~ 16266550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgctacaaagctaataaagactatcagctccacacaactctctctgtatttctcagtatgactatgttcagaagattgtggcgtccggtgactttcccagATAGAtgattacctcttctgaagagtccaagCGATAGGCTTACTTTAAGTTCCCTTCTGTCATTCATCTCCGTGTGGCTTTTCATCAGCTGAAGAACAGGATTTTTTTCC

Function

GO: NA

KEGG:

id description
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309577 lncRNA upstream 188339 16015731 ~ 16078000 (+) True G228172
TU309573 lncRNA upstream 360675 15905061 ~ 15905664 (+) True G228171
TU309563 lncRNA upstream 471532 15792841 ~ 15794807 (+) True G228164
XR_005638130.1 lncRNA upstream 544097 15721524 ~ 15722242 (+) True LOC120553205
TU309521 lncRNA upstream 566437 15689908 ~ 15699902 (+) True G228136
TU309664 lncRNA downstream 12242 16278792 ~ 16280061 (+) False tmem168a
TU309672 lncRNA downstream 55568 16322118 ~ 16324557 (+) True G228246
TU309722 lncRNA downstream 210647 16477197 ~ 16485799 (+) True LOC120553146
XR_005638114.1 lncRNA downstream 210657 16477207 ~ 16761161 (+) False LOC120553146
XR_005638116.1 lncRNA downstream 210657 16477207 ~ 16761161 (+) False LOC120553146
XM_039792312.1 mRNA upstream 45754 16216041 ~ 16220585 (+) False gpr85
XM_039792311.1 mRNA upstream 45754 16216041 ~ 16220585 (+) False gpr85
XM_039792310.1 mRNA upstream 45754 16216299 ~ 16220585 (+) True gpr85
XM_039791049.1 mRNA upstream 52462 16213082 ~ 16213877 (+) True LOC120553010
XM_039791323.1 mRNA upstream 90178 16163395 ~ 16176161 (+) False ppp1r3aa
XM_039791860.1 mRNA downstream 586 16267136 ~ 16278955 (+) True tmem168a
XM_039791595.1 mRNA downstream 92242 16358792 ~ 16473673 (+) False dock4b
XM_039791596.1 mRNA downstream 92242 16358792 ~ 16473673 (+) False dock4b
XM_039791593.1 mRNA downstream 92242 16358792 ~ 16473673 (+) False dock4b
XM_039791592.1 mRNA downstream 92243 16358793 ~ 16473673 (+) True dock4b
XR_005638140.1 other upstream 1068509 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 2261446 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 2261490 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 2431338 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 2432008 13834221 ~ 13834331 (+) True trnal-caa_24
XR_005638118.1 other downstream 504508 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 504512 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 653113 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 1323541 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 2263615 18530165 ~ 18531168 (+) False srr

Expression Profile