RNA id: TU309755


Basic Information

Item Value
RNA id TU309755
length 2638
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G228295
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16824829 ~ 16831239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACCTCAATGTCTTTATTGCTGTTGAGTGAAGCGTACAATGTTTAAAACATTCATCCAGTTGGTAACTGCCCACTTGTATGACATTGGGAGCGtttagagagaatacagataGTTTTGCATAGGCTTCGCGCTACACAAACAAGTGTCTGGTTAAACATAGAAGaacttttaaaaaacataacatggacacaaggttgtaaaaaaaaaaaaaaaaaacggcattaTAAAACCACtgtattaaaacaaaacaatgtcaCATTAAATCACGCTTAAAAATATTTTGGTCAAGCTCCCCTGCTCTTTTTTAGGAGCCATGGAATGTGATTGTCAGACTTTTGAGCAGTAACATCGATCAATTTAATGCCCCGTCAAACCGTTATTATCAAAGCTTGTGCCGCGCAAAAACTATGAAAGGGAATGTGCTACTCAAGACGTCATAAGTCCTAATATCAGATTGAGTTGCTTTGAGGCTATCATGTACTGTACCTCAGctgtcaaacttttttttttattgcaatcaTAAGGCGAAAAGACTTACATAGTGGTAAATATCCTTGTATTGtactattattgttattgttaagcTTAGGCACCCTGATTTTACTTTGTATGCCCTCAATTAGAAAATGATCGCTGAGCATAAGAGTGTGCATAGAGACAATAAAGAAGTTAGTAATTAGTAGAAGTTAAGGTAGATTTAAGAGGGTTGGTTTGCTGATTTCCTACATTGTCAAACCTACAACGAAGGCACCTTGTGCACCTGCTTTTTAAGAGGAATGTCTGAAGATTTTAAAGTGATCAAACAGGTACAAAAGCTACAAAACAGCTAGAAATAGAAAAGgacaaaacacattaaaacataaataaaaatgacattaagGATTATAAAAGTCATAATGGACTTCTGAATATTCAACACTCCTCACCACCGAAATTAACTGCCTGTTGGTGAATAGtttctggataaaaaaaaaaaaaaaataccttttgTTACGAGTATAAAGATGTTATATAAGATACAGTATGATAGGTcatattcaaaacatcacaTGTGCTAACATATATTACTCAGACCATTGCTGCACTATTGGTAAGACATAATAAAAGTGAAATCAGCTAAATTCTAAGTGCTTATATTTCTATCCTGAAACTGGTGAACGTTGAATAAAATAGCAATGTGTGAAGCTTTtgctttaaatataaataaaaaaagagatggaaaatgtactgtatgaggGAGAGAACTGATTCAACCATCTCTCTGGAATGTGGAAACTTTTAACTCATCTACTCCGTCTCTATCAAATCTGTCGGCATGGAGTAGAACAAAAtcaaaatttaataattttttttttcttcctggcAGGATTGTATAAAGTAATTAGTAATAGTAATTACAATTGTCCAAATTTCAcagcattttgtttcttttagaAAGCAAAAATCATTGTGCAAAGGCACTATATACGTGGCAACCGTACAAAAATATGATGCTGTTTCGGTACAGTGCTTGGACAGCATCTCTCCTGTCCCTCCGTTTTCTTGGGGTCCCTCTTGGGAATGTGATCATTATTTGGTTCTTAAGACAAAGTCAAAGGAAGAGTCTTGGATTGTCGTGGTCCCCAGCTGCAGTGGCTCCTTCAAGACATTAGTGCCCCATACCGTTGGCGACTGATTTGGTCTCCCCTCTGCCTGCCACCTTGGTTGGAGAAGCGCCTTTGTTTTCCCATAGACTCCTCTTGTTGGTGACATCAACAGGCTTCAGGTCCTGtccgagagagacagaaaaacaagagGCAAAGACAAAGCATCCTATCAGTGGTGCTCAGAGTGCCCAGCATTTGTAGGTCAATTTGAAAATAGTTGTCATTTTGCGGGCAGAGTATCTGAGATGGAGAGGAGAAGAAATGACAGATGAGGACGGAGAGCTTGAGGAACGAGAGCAAAGGTTGACAGACACTGGCAAGCAGAGAGGTGCTTGTCTAGAGGACACTCCATCACAATGCAAAGTCAAATTTGGGGACGGGAATATTTCGGAAAGCTTTGTCAAAGGTCTCGTTCATATCCTCAGTCTGTCCTGCGGTGTGTTACCTATTTGAGCGCCAGCTATAATCTGTGACATTGGAAAGCTCTAACATAAATAATTTGGATGAAATTGGTAAGAGTGAAGAGAGGCACAATTCACTGGCATGGAGCCAGGACTGAAAAAACACTCTGCTAGCAAAGCTTATGATAAGCTGAAAGATAAAATGCATAAGTGACGGTGTATACCAAACTGATGCCAAGTCTACAATAtccacatgtactgtatatgtatcaTATGACAGATGTAAAAGTGGTTTGAGACTAGAGGAGAGTgattaggcaaggtgtgatttctgtttgtttatttgttttattttcctcgagactgcagagggtggggggtggctGAGAGTTTTCGTTCTTGTTcagtttgtgtttctctgttctgtatgtccgcatataaaaaaagaaaaaagaaaaagttgatcagaaaaaaaagtggaCTGAGGCAAGTTTGGACACTTAGTTATTTTTCTTTGTGGCCACCAGGTGGAGCCAGACAGATAATATCCATAGACTGTTTACAGTCTATAATATCTCAACCCGACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309741 lncRNA downstream 77789 16746743 ~ 16747040 (-) True G228290
TU309734 lncRNA downstream 288536 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 600680 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 1293390 15531131 ~ 15531439 (-) True G228120
TU309481 lncRNA downstream 1314047 15494995 ~ 15510782 (-) False G228111
TU309834 lncRNA upstream 83368 16914607 ~ 16949806 (-) True G228360
TU309840 lncRNA upstream 121704 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA upstream 172763 17004002 ~ 17007000 (-) True G228363
TU309844 lncRNA upstream 176510 17007749 ~ 17008981 (-) False slc37a3
TU309843 lncRNA upstream 176706 17007945 ~ 17009590 (-) False slc37a3
XM_039791234.1 mRNA downstream 172696 16635871 ~ 16652133 (-) True LOC120553145
XM_039792229.1 mRNA downstream 495221 16322115 ~ 16329608 (-) True ifrd1
XM_039791328.1 mRNA downstream 659925 16063870 ~ 16164904 (-) False foxp2
XM_039791733.1 mRNA upstream 23753 16854992 ~ 16866194 (-) False LOC120553389
XM_039791732.1 mRNA upstream 23753 16854992 ~ 16866194 (-) True LOC120553389
XM_039791734.1 mRNA upstream 23753 16854992 ~ 16865508 (-) False LOC120553389
XM_039791736.1 mRNA upstream 36592 16867831 ~ 16868673 (-) True LOC120553391
XM_039792197.1 mRNA upstream 38497 16869736 ~ 16880178 (-) True dhx57
TU309744 other downstream 1397 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1032976 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1736500 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1763400 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3015150 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 463883 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 999433 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 999433 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1538436 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2607278 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile