RNA id: TU309794


Basic Information

Item Value
RNA id TU309794
length 2078
lncRNA type sense_over
GC content 0.39
exon number 2
gene id morn2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16880276 ~ 16916928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCAGTTTGCGTCGAGGCGAGCTGCCTGCAACTGCAACACAGAGCTGACTGCTTGTTTTAGAGGACTGTTCCTTTTAGGGTGATTTAGTAAACAAAAATAGCACGAAGTTTCCTTGTGTCATTTTCACAACCTTTTAAATTTAGTTGTTTGACTTTTCACATTTCATAAATTGGCCGATACACAGCGTTTCCTTTCGGCTCTAACAACTGCTGGGGGAAGCTGTCTGTCACGGATGTCTGGTGCGGTGTGATTGTGAAGTTTCtcacaaccaacacacacacacacacacacacacactCATACACTAGGTTAATGAGAGGTTCCTATGCACCTTTAAAGTTTCAATTTATTTAGACTTTAATTTGCTTTTACCAAAATTtaaaaaggaatagtttgacattttgggaaatgccgctttttttttactttcttttcgaGACTTGCATGAGAAGATTGATCCCACTCTCATGTCCGTACGCTAAATATGTAGCTGGGGCTGgcagcaggttagcttagcttagcataaagaccggAAGCAATTGGGGGAAACTGCTAAATGTCAAAATATTCCTAGACTTTGGTTGGTATTGTATATTATGTAATATTACTCATAATGTCACACAACAAAATTGCATGAATTTATGCATATTTGCATTCTGAATTTGCCAACGTATTAGTAAACTGAACTAAACAAAGCTTTTGTGCCATTTAATCTGGAAAAAgatcacttttatttattttttttaaaacgtaCAGTCAATTGTCAGAGCTGGATATTGAGTTTGTATGTTCAAGCATTTGATCTCTCCTAGAGAGTAGAGCTGGCAGCGTCTCCCAGCAGGTCAGCAGGGAATCTGATTGGTTCAGGTGCAGAGCCGGTATAGTgacgggggtggggggggggtgcactTGGTTGGCTGTCAGGTGAAATGACTGTCAGGATTTTCTAACGTCCACCGTCAGCTCAGCTGGGGATGAGCTGCCGAGGATGACGACTGTGCAGCTCATTATACCGCTAGAATCTAAGCCTTCCAAGTAGGATagaagaaaatgaaatgaatcaGGCATAGCACGCCAAGTTTGGAGATCTTtacaaaaaaggtgaaaaatcccttaacaggcaaacacacatgcatttgCGGAGAAGGTAAATGTGCTTATttgataaaaaaatgaatacattagattttattttttaaacagaacCCACAGAGATTTGTGAGTGCCAAAGAGTTGTGGTGTGTATGGTTAAGTACAGTAAATCTTAACAGCACCAAACTTTTCAGTGAGGACATGATTGAAGAAGTACCGGCCAGGCAGCAACTTTCTGCTCATTTGGTATctctgtaaatattttttgtcaCAGTATTCAAAGTGAGGGTTTAAGTACATTTATTACAATTATCATTAGAACATTTAAATTGCTTATCTTTATAACagatgttgattttttttttcttcccaaaaGTAAATGATATTAGATGACgcaggagagagaaagatagaaaaatcttaatttcaatataaatatctaaatatacagtatactccTTGTAATGATCTGACAACCTGCCATGCTTCTAATACAGTATAAGTCATTCTTGTtaaaaggaaaagacaaaatGAAAAGCTTAGCTCTCACTAGCTTGAAATACTTTTCATTACTTCAACACTGGCGCCATGTGAGCCGCTGGAAGCTGAGAAAGAAGCAGCCAATGAGATGGTTTCACTGTGGCTTTGAGTGACAGGTCAGAAGAACCAGTCACCATCCAGTAATTCTAAGAAGAAAGTTATGACAAACTACAGGCTGATCCGTAGGGACAGAATgcataaaaaatgtttaaaaacagaCAACGGTGAATCTCAATGAAACAAGCAAATAAAAGACATGATATGATTGGACCCTGAGATCCCGCCTAACCCCCGCCCACTAGGTCTAACCCCGCCCTCTCAATATTACACAagagaacaacaaaaacataatcacataggtagaaaagaaaagacaacaaaaaaaggaCAGGAAAAAGTGTCAGTCTAAATCTTCAACGGTAATCTTCATTCacacagatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309770 lncRNA upstream 12798 16866310 ~ 16867780 (+) False stmp1
TU309723 lncRNA upstream 48457 16831604 ~ 16832121 (+) True G228272
XR_005638116.1 lncRNA upstream 119417 16477207 ~ 16761161 (+) False LOC120553146
TU309792 lncRNA downstream 72 16917000 ~ 16919571 (+) True G228326
TU309827 lncRNA downstream 90874 17007802 ~ 17010730 (+) True G228353
TU309828 lncRNA downstream 96753 17013681 ~ 17014664 (+) True G228354
TU309829 lncRNA downstream 98150 17015078 ~ 17015306 (+) True G228355
TU309830 lncRNA downstream 100617 17017545 ~ 17017992 (+) True G228356
XM_039791738.1 mRNA upstream 12782 16866314 ~ 16867796 (+) True stmp1
XM_039791735.1 mRNA upstream 25704 16833664 ~ 16854874 (+) True tnnt2e
XM_039791238.1 mRNA upstream 49335 16771063 ~ 16831243 (+) False cald1a
XM_039792432.1 mRNA downstream 63078 16980006 ~ 16980757 (+) True LOC120553739
XM_039791556.1 mRNA downstream 84017 17000945 ~ 17005314 (+) True cdkn1d
XM_039791558.1 mRNA downstream 104964 17021892 ~ 17032722 (+) True LOC120553296
XM_039791798.1 mRNA downstream 271258 17188186 ~ 17196857 (+) True wnt7ba
XM_039791799.1 mRNA downstream 271258 17188186 ~ 17196857 (+) False wnt7ba
XR_005638118.1 other upstream 49335 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 49335 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1682748 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 2875685 14002363 ~ 14004893 (+) False LOC120553485
TU309802 other downstream 2735 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 673163 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1613237 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2493562 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2542155 19459083 ~ 19459154 (+) True trnaq-uug_5

Expression Profile