RNA id: XM_039791551.1


Basic Information

Item Value
RNA id XM_039791551.1
length 1221
RNA type mRNA
GC content 0.41
exon number 6
gene id morn2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16880276 ~ 16916928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACCAAATTTTAACGAAAAGAGTAACGctaataatttttattttttatttttgtaactaTGGCAACTTCAGTTTGCGTCGAGGCGAGCTGCCTGCAACTGCAACACAGAGCTGACTGCTTGTTTTAGAGGACTGTTCCTTTTAGGGTGATTTAGTAAACAAAAATAGCACGAAGTTTCCTTGTGTCATTTTCACAACCTTTTAAATTTAGTTGTTTGACTTTTCACATTTCATAAATTGGCCGATACACAGCGTTTCCTTTCGGCTCTAACAACTGCTGGGGGAAGCTGTCTGTCACGGATGTCTGACAATAAGGAAAGTAATTATTCAAAAACTCAAGGGGAAGGACCTATAAAGGTATCCTACATTTTCCCAAATGGTGACAGATATGAGGGGGAGTGCAGCAGGGCTGCATCAGGGGTGATGATGAGGAGCGGTACTGGTAAACACACCTCAGCAGGCGGCACCACATATACTGGAGAGTGGCTTGAAGACAAAatgcatggCAGAGGGACCCTGCAGCATCCCTCTGGAGCACTCTATGAAGGAGAATTCAAAGACAACATGTACCATGGCACAGGAACATATACCTTCCCAGACGGCTCTACTTACAAAGGTCACTTTCACAAGAACAGGTTGGAGGGAGACGGGACATTCACTAACACACAGAGACTGGTATGGATGGGGGAGTTCCACGGCAAAGCAGCGCTGGGCCTGAAAATGCAGCACAACATTTAGGCAAAACAAGCATTATTGTACTGCACTTCATAAAATACACTGTATGTTCTATGAGAAAATTAAACTATATTTACAcatcgtgaatgtgaaaatgaactgctacctcctctgtcagctctagccactgaaaagaaataagtggagaaattgggccaattacaaaagctggtcagtctgacatcatgttgcctgagctcattactattcatgagctcgcccagttaggtaaaggatgctgatagacACAGCAAGTGTATCTTTATGTAAGCCTAATTTCACTCAGAAAATGTCACACTGGGGTTATTTTTTCTTGCCCTTTGTAACTATGTAGCTAACTAAAATAAATCCAGAAATACTAGTGGCAAGTTTGCTGCAGTTATTTCATTGCACACGTTTTGTTCCTTTCTTACACTTGAATTTTGAAAAAGTTATGATTCCATCTATGAAAAGCACTTAAATAGAAACAATCTGAACAAAACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309770 lncRNA upstream 12731 16866310 ~ 16867780 (+) False stmp1
TU309723 lncRNA upstream 48390 16831604 ~ 16832121 (+) True G228272
TU309727 lncRNA upstream 267806 16612502 ~ 16612705 (+) True G228276
TU309726 lncRNA upstream 314373 16565665 ~ 16566138 (+) True G228275
XR_005638115.1 lncRNA upstream 395291 16477213 ~ 16485220 (+) False LOC120553146
TU309795 lncRNA downstream 318 16882838 ~ 16887563 (+) True G228328
TU309792 lncRNA downstream 34480 16917000 ~ 16919571 (+) True G228326
TU309827 lncRNA downstream 125282 17007802 ~ 17010730 (+) True G228353
TU309828 lncRNA downstream 131161 17013681 ~ 17014664 (+) True G228354
TU309829 lncRNA downstream 132558 17015078 ~ 17015306 (+) True G228355
XM_039791738.1 mRNA upstream 12715 16866314 ~ 16867796 (+) True stmp1
XM_039791735.1 mRNA upstream 25637 16833664 ~ 16854874 (+) True tnnt2e
XM_039791242.1 mRNA upstream 49268 16771065 ~ 16831243 (+) False cald1a
XM_039792432.1 mRNA downstream 97486 16980006 ~ 16980757 (+) True LOC120553739
XM_039791556.1 mRNA downstream 118425 17000945 ~ 17005314 (+) True cdkn1d
XM_039791558.1 mRNA downstream 139372 17021892 ~ 17032722 (+) True LOC120553296
XM_039791798.1 mRNA downstream 305666 17188186 ~ 17196857 (+) True wnt7ba
XM_039791799.1 mRNA downstream 305666 17188186 ~ 17196857 (+) False wnt7ba
XR_005638118.1 other upstream 49268 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 49268 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1682681 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 2875618 14002363 ~ 14004893 (+) False LOC120553485
TU309802 other downstream 37143 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 707571 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1647645 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2527970 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2576563 19459083 ~ 19459154 (+) True trnaq-uug_5

Expression Profile