RNA id: TU309795


Basic Information

Item Value
RNA id TU309795
length 3228
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G228328
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16882838 ~ 16887563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCTGATATTGTACTTTGTAATTCTATTGAATAATGCCTTTATGGATCTGTAATTGCACATACCTCTGAACAAATTCAGTAATGAGGATTTATCTAGACTATACAGATATGGAAATGTGTGTAACAAACATATATACCGTTAGAACACCCATACAATGCTAAACACTTCTGGTAAAATACTGTACCAGATACATGAAACAGCTATTTTCATTGATTGTACATTTTTCAGGtagaaaataacatttttgtaTTGCAAACCTTGAGTGGTGATTTCAATGAAAAACCATACATTTTGATCATGAAGGCAACAACAATGAAATAATGGCACTCAAATTTggcacaaaatacaaaaaatacatctgAACTTGAAATGTCACTGACATAAATACAAACTCACAATTAATTATTGTGTTTGGTGAAAATGTGCAGCCTATGCAGTCAAAGTGCTTTAGGTGTTATTTTCTTATATGAACGTGATGATAAATGTGTATTCATCACTACAGGTAGTGAGCTAGATGATGGCAAGGAAGCTTTAAAACTTTTGCAATATATTATCTCCATAAACCTGAGAATCTATAAAGTTTACAATACTATTTTTGAAAGATTTCGCCTtcctgaagaagaaaaaacatccaCTGTAATGCAGAACACAGACATTGAGAGGAAAAGTACACTTCTAATTGCGCTGGAAACATaagtagacaaaaaaaaaaagccattccAAATACCATATTTAAATGTGAACAGGTACTCAAAACAAAACAGTGGCCATGCACATTTCAACAGAGAAGCACAAGACTCAGTGTCAAAATTATTGTTCTATACAGAAATAATAAATGACTGAGCTTGACCCCTCGAGGCATGTAGATAACAAAACCCCAGCGAGAATGATACGAAAGAAAGGTGAACATgcttctttttgttttctgtgcttgttCTTGTGCTTCATTTCCAGGAAACAATCCTGAGCTCTCAACTCTGGAGCCCCGCTTAGGTAGTTAGTAACGGAAGTGAAGGAACGGATCAGGTACAGTGAAGACGAATAAGAAAAACAGCACCATTGTGTGACAGCTGTGTTCTTCCAAGCAAGGGTGGCAAAGTGCTCACCAAGGCCAACACCAAGGAGGACAGTGGTTTACATGTGTGCTGTTGGGGAGTCACAATTGTTAGTTATTCTGATCATTGCTGAGGTTCCATTATCCCAGGACGGTTCCATAGAAAACTTCTGGGAAGTGGCTGTTTCTCCGAATGGCCACATGGGGCAACAATGAGCCCATTCCACACTCGGAAACTACATAGGTGAGATTTGTGCTTTATTGGGAAGTTTTTATAAACAGTATTTTAGATTTTGAAAGAGAAAATTATTCACGGGAGAagacagagatttttttttggtcaaattTACAGCTGGTTAACCAACCCACCTCTGTTAAAGAGCTGCACACAGCCCCCTCCCTGAGCTTTTCTATGGGGCCATTACAGGCTTTAGGTTCGATATGTGATAACATGAACAAATCCTGGATGACATCAGTAATTACAGATTTGGTTCTGTGATTTCTGGATTTCAAATTCAAAGGATGCCAATGTTTTACACACCAGGAATAGAAAGGACTCTGTACAAGGTTACGTTTCTATTTTTAAAGAGAACAAATAGGATACAGTTTCTTCCAGAAGATCCGGTTTGTTTCTTACACCAAACCATCCTCCACACATCTGCCCATTTTCATGtgctgtttttttcctttctgcgCACACATACTTTTTAcgttcacaaacaaaaaaaacatacacttaCAGCtggtatatttcttttttttggtgaCATTATACTAGATCATTATGCCATTAGTAGAAATAGGTCCCACTTCTACATTTGGACTATCAAAATTACCCTGTGGTTTGCTtccaaaaaggccttttttccTAGAAAATACATAAGAAAAACTTTCATCAATCCATCACCCACAAACTACAACCCGATGACTACAGTAggctttgtgtaaaaaaaaaaaaaagaactgattAGAAATCATGTACATctcaattgaaaaaaaatatatatcagaaAATGTTTAACCACATACATTGGTACAAATAAATAGGAAAACATTACTAAGGAGTCAAAAAAGcaccaacatttaaaaaaggggACATATAAATTGACAATGTGGTGAagatatttttttgggggggggcagTATAACTGGCCGAAACAGTCTCCTGCTACAGCGGTTTCTTATTAACTGCTACCTCTGTTCTTGCCTGTCACGTCCATGTGGGTTCACAGTAGTCATAGGCACATGTTAACGtcaagtgtgcgtgtgtgtgtgtgacatctaTTTGTGACGAGCTCATAGCAAGAAGCTCCATTTGTTCGTCAAATTTGCTTCATTTTACCCTTCATCTTCCATCTTCTTCCATCACTAGATAGCCTGGGAGGTGGCTTCTCCATCTCCAGCTTCTTTCTCTTCACTCTCCCCCATCCCTCCCTCACTGATGTGAAATATAACCCCCATTCCTTCCACCTCCTCTCCTCGCTCTCTCCAaccttctccctcccctccatcACGGATTCTGCAGCAGCCCCTCCCACTGGATGGGCTGGGAGAAGACCTCTCTCTCCAGCCACATCTCGTAGCTGTAGTGGAAGTCCTCGGGCAGCTCCACGCGCTGACCCAGCACGCTCTGCAGGCAGTTGTCCACCGGCGCAAAGTCTCCGTTCTTGTTCTTGTCGTAGCGGCGGCTGTTGAACTTCTCGATGCTCTCCCGCAGGGCGCACTCCTCCGCCTGGAAGTCCCAGGGGCGTGCGTCGATATCTTTCCGTAGGCCCAGTCGTCATTGAGCCTGTGGCGGACCTTCTGGTAGATGGCTGACATGGTCTTCATGTTGCTCTTCCTCCACTGGCGGCCCAGGTACTTGGTCTGGATCTTAAGCAGCTTGAGCACGTAGAGCTGCATCATGGCCTGCTTCACCTTCAGAGCTCTCTTCAGGATGGGGGCAGACTTGAACACCACCAGCATCTGAAAAAGGATTACAATTGACTAGAGGAGAATGTTTAAGCATGCGGTGGTCCATGAAGACCTTCACCGTGTAATAGACAATGAACATGGACTGGCTGACTGATTTGTACCAGATCATAATGggacaatttattttaaattttctttacatttttccaagggctcCCTGCCCTGCTGGGCCCCTGGGTGTGCACTCAGATGTTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309770 lncRNA upstream 15058 16866310 ~ 16867780 (+) False stmp1
TU309723 lncRNA upstream 50717 16831604 ~ 16832121 (+) True G228272
TU309727 lncRNA upstream 270133 16612502 ~ 16612705 (+) True G228276
TU309726 lncRNA upstream 316700 16565665 ~ 16566138 (+) True G228275
XR_005638115.1 lncRNA upstream 397618 16477213 ~ 16485220 (+) False LOC120553146
TU309792 lncRNA downstream 29437 16917000 ~ 16919571 (+) True G228326
TU309827 lncRNA downstream 120239 17007802 ~ 17010730 (+) True G228353
TU309828 lncRNA downstream 126118 17013681 ~ 17014664 (+) True G228354
TU309829 lncRNA downstream 127515 17015078 ~ 17015306 (+) True G228355
TU309830 lncRNA downstream 129982 17017545 ~ 17017992 (+) True G228356
XM_039791550.1 mRNA upstream 318 16880276 ~ 16882520 (+) False morn2
XM_039791551.1 mRNA upstream 318 16880511 ~ 16882520 (+) False morn2
XM_039791738.1 mRNA upstream 15042 16866314 ~ 16867796 (+) True stmp1
XM_039791735.1 mRNA upstream 27964 16833664 ~ 16854874 (+) True tnnt2e
XM_039791242.1 mRNA upstream 51595 16771065 ~ 16831243 (+) False cald1a
XM_039792432.1 mRNA downstream 92443 16980006 ~ 16980757 (+) True LOC120553739
XM_039791556.1 mRNA downstream 113382 17000945 ~ 17005314 (+) True cdkn1d
XM_039791558.1 mRNA downstream 134329 17021892 ~ 17032722 (+) True LOC120553296
XM_039791798.1 mRNA downstream 300623 17188186 ~ 17196857 (+) True wnt7ba
XM_039791799.1 mRNA downstream 300623 17188186 ~ 17196857 (+) False wnt7ba
XR_005638118.1 other upstream 51595 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 51595 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 1685008 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 2877945 14002363 ~ 14004893 (+) False LOC120553485
TU309802 other downstream 32100 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 702528 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1642602 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2522927 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2571520 19459083 ~ 19459154 (+) True trnaq-uug_5

Expression Profile