RNA id: TU309840


Basic Information

Item Value
RNA id TU309840
length 1183
lncRNA type read_through
GC content 0.38
exon number 2
gene id G228363
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16952943 ~ 17007000 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTTTATATCAAtatcattaatttttttattttgagcacACTATATGAAATCAACAATGAGAAAGGCAACAATGCCCCAACAACCCACCaatatattttctttacaaTTATCAAAAAGGATTTTGATCCCATACAAATACACTTACATGTAGCAAGGGTACATGAACCAGCATTAAATAACAATGACAAATCCCATACAAAGATTATCATACACTCACATGCATATACAAAGTTATAACAAAAAAACCGCTACACTTCAATATAGCTGCGACAGGCGAAGTTTGCTTGGGCACAGTGAGACACTAGCAGATTAATCTTGACATGCATCATTTTAGTTTTCCACCCAACAGACTTGAGGATTACTACCGCCAATTAATGTTAGAAACTGGGTCTAACAATGTGACAACTCTGATTGaaggaaaacatttttaataattacAAATGTCAAGTCATTTCTAATCTGTTTCTCAGTGagtatttgtatgtttttgtctttttaaaaagaTTACCATAAAAAAGTTCTCTTGTCAATGTTTAAAGTAGTGCAAATATGTAGTTCCAGAAACAACACAGTTATATCAAGAAATATGGGGAATTTATAATTATTTCCCTAGACTCAAAATAAGTTAATATACTTTGAAAGTTTTGTCTGTGAAGATAGGTGCACACAAacattgtcacacacacacacacgcacgcatcaAAAGttggcaaaaaacaacaactttcagATAGCCATATTTGCTATTTTTAGATCTGTGAAATATCGCCTTGTTGAGCCATGAAAGATAACAACATGATTATGAACAACTACTTTCATGCCCATTTTTCGCAGATTGAGGCGTTTGGTTCGtgaaagagagactgagagacttTAAAGGGGACCGACAAAAGCGTGTCTGAATCACAGGCCGCTTGTCTGGGTAGAAAAAGAGACCCTTTGATCCAGAAGGGGTCGGTGACATTTTCTGGTGAGGGTTCCTTTTTATTACAGTTTGTCCCTTTCCCCCACACCACCACCATTTCCTCTGCTCTGTCTATTTATGGGGGAGCAAAGTGAGGCAGCGAGAGAGGGATAGAAAAACAAAAGCTGCCTATACCcccacggcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309834 lncRNA downstream 3137 16914607 ~ 16949806 (-) True G228360
TU309755 lncRNA downstream 121704 16824829 ~ 16831239 (-) True G228295
TU309741 lncRNA downstream 205903 16746743 ~ 16747040 (-) True G228290
TU309734 lncRNA downstream 416650 16536018 ~ 16536293 (-) True G228283
TU309647 lncRNA downstream 728794 16216115 ~ 16224149 (-) True G228221
TU309844 lncRNA upstream 749 17007749 ~ 17008981 (-) False slc37a3
TU309843 lncRNA upstream 945 17007945 ~ 17009590 (-) False slc37a3
TU309887 lncRNA upstream 130270 17137270 ~ 17138275 (-) True G228401
TU309917 lncRNA upstream 214205 17221205 ~ 17222228 (-) True G228423
TU309936 lncRNA upstream 236465 17243465 ~ 17243980 (-) True G228439
XM_039791547.1 mRNA downstream 40314 16882811 ~ 16912629 (-) True strip2
XM_039791549.1 mRNA downstream 40316 16882811 ~ 16912627 (-) False strip2
XM_039791548.1 mRNA downstream 40316 16882811 ~ 16912627 (-) False strip2
XM_039792197.1 mRNA downstream 72765 16869736 ~ 16880178 (-) True dhx57
XM_039791736.1 mRNA downstream 84270 16867831 ~ 16868673 (-) True LOC120553391
XM_039791557.1 mRNA upstream 724 17007724 ~ 17020735 (-) True slc37a3
XM_039792344.1 mRNA upstream 102537 17109537 ~ 17112443 (-) True LOC120553682
XM_039791082.1 mRNA upstream 107008 17114008 ~ 17116453 (-) True cdpf1
XM_039791719.1 mRNA upstream 109753 17116753 ~ 17135130 (-) True pparaa
XM_039791800.1 mRNA upstream 189941 17196941 ~ 17207454 (-) True atxn10
TU309744 other downstream 129511 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1161090 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1864614 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1891514 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3143264 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 288122 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 823672 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 823672 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1362675 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2431517 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile