RNA id: TU309843


Basic Information

Item Value
RNA id TU309843
length 1646
lncRNA type sense_over
GC content 0.40
exon number 1
gene id slc37a3
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17007724 ~ 17020735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTATAAGTACAACACGGCCACGACTCAAATGATGTAGCCTACCCAAGGGACCTGCAAGTTCAttgagatggatattggaaccaGCATATCACATTCAGTCACGACGTACCATCACCAGACTGGTAGAAACTCACTAGGAAGAACGGAATAAGGTTCCCCAGGCTGGCCAAGTTAGCGCGGAGGTACCTGCGCATCCCAGCAACGCAGGTGTTTTCGGCGGCTGGACTATCAGTCACCAGGTAGCGGTCGCGTCTCACCCCAGATGATGTCAACATGCTTATCTTTCTCAACGCACATCAGTAGACTGGTGCAGAAGTTGTATCTGAGTTAGCCTactggttattttttattaggctTTGTCCCGTGCCTTGGATAGTTTTGAGTTACATTCTGTTTAAGAACGCCGGCTCGCAGCTAcaggttctgctgcttcagagcGCCGCACCGCAGCGCATATATttataatctatatctatatctataacgtccagtttaactgccacaagttgttcttcttgtaattaagatctcatcgaggaaaaacacgctgtatttttgtattttcattgtatttttaatttataaaaagttaaataaataatgaattttaatataaaaatattaatgattaatcgatagtcGATCGTTAATTCTCCCGACGATCGACGaagaaaatgtaatcgaatgcccatccctagtatgatctttttgttgttttcggTCGAGATAATGAATATTGCACTGTAGTACAGTAGGCAAAGTCTGGAAGATTTTAGTGAACCACTCAGATCTTAGCTTGGTTTCTCTTGTGTACAGTGTTGTGTAATCAGGGTTAGAAGCTATACTGTCTGCGGGGACTGGTTCTCTCGattctgtgtatgtgtcagtCACTGATTGATTTACTGTATGCTCATTCCTTTTTCAAGTTTTAGTGTCTTAAGTCACATGCAATTGCCATGAAAACCCACATGTGATATGTGATATAAACACAATAAGAAAAATCTACCATTGCCTGACCCATTAAGTTTACAGTGTAGCATGCCTAATGCACTTTAAAGTGTAAACTGCATACTGACATTGCAGAAGAGACACATGTTGCCTGTTTGTAGCAGGAGCTGCACCTTCTCACGGTTGTTTGGGGAACTTGACTGCCAATCTGTGTCTGAACAGATTTAAAGGCCAATAAAGGTAAATTACTCATGATCAGGGTGGGCAAAGGTCATACAGTATAACACCAGCCATATGCTAGTTAATAATTGGGCAGGTTGTCTACTTTACTAGACACTGCGGTCAGTAACCAGCCATCATTTTGGGGGAAGATTGTTTTGGTTCAaatcaggaaaaaaaactagaatatgtaattttttttttttttattataatttttttttctttcagccaCTGTGGCCAGTAGACACAACATTTTAGTTTGCTCTGTTGCATGTCGACCATTGAAAGTACTTTTAACATCTGTGACAGCAGGGCATCTTTGTATCATCATTACTGGTATGAGATGTGTTTCTTATGCTAAACCAAGAGCACTGGAGCATAAAATGAGACTACACCTCCGATGTCTCTGAACTTGCAGAGTGTAATAGAATGTAAATTGAAATGTTTGTGGAATGTGTAACCCTATCTGtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309840 lncRNA downstream 945 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA downstream 945 17004002 ~ 17007000 (-) True G228363
TU309834 lncRNA downstream 58139 16914607 ~ 16949806 (-) True G228360
TU309755 lncRNA downstream 176706 16824829 ~ 16831239 (-) True G228295
TU309741 lncRNA downstream 260905 16746743 ~ 16747040 (-) True G228290
TU309887 lncRNA upstream 127680 17137270 ~ 17138275 (-) True G228401
TU309917 lncRNA upstream 211615 17221205 ~ 17222228 (-) True G228423
TU309936 lncRNA upstream 233875 17243465 ~ 17243980 (-) True G228439
TU309981 lncRNA upstream 263358 17272948 ~ 17275477 (-) True G228474
XR_005638072.1 lncRNA upstream 392658 17402248 ~ 17402832 (-) True LOC120552976
XM_039791555.1 mRNA downstream 20390 16983903 ~ 16987555 (-) True sapcd1
XM_039791552.1 mRNA downstream 28910 16972532 ~ 16979035 (-) True prdm4
XM_039791554.1 mRNA downstream 35498 16965571 ~ 16972447 (-) True tmem209
XM_039791553.1 mRNA downstream 43001 16917305 ~ 16964944 (-) True ahcyl2b
XM_039791548.1 mRNA downstream 95318 16882811 ~ 16912627 (-) False strip2
XM_039792344.1 mRNA upstream 99947 17109537 ~ 17112443 (-) True LOC120553682
XM_039791082.1 mRNA upstream 104418 17114008 ~ 17116453 (-) True cdpf1
XM_039791719.1 mRNA upstream 107163 17116753 ~ 17135130 (-) True pparaa
XM_039791800.1 mRNA upstream 187351 17196941 ~ 17207454 (-) True atxn10
XM_039792327.1 mRNA upstream 199036 17208626 ~ 17220355 (-) True LOC120553673
TU309744 other downstream 184513 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1216092 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1919616 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1946516 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3198266 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 285532 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 821082 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 821082 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1360085 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2428927 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile