RNA id: TU309971


Basic Information

Item Value
RNA id TU309971
length 1882
RNA type TUCP
GC content 0.46
exon number 2
gene id G228465
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17295122 ~ 17302198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggaaaaaaaaaaaaaaagagaggaaaaaaTTAATCTGGCCCTGTAAAGAACCAAAAAGGCATCAGACACATACATCTGGTCAGTGCTCATTCCATTCAGTGTACATTCTGGCCCTATTGTGGGTTTAAAGAAACAGTTCCGAGATGACATGGCTGCGATGCAACAAGCAGACAAGCAATACGGACATTCGTGCACGAGTGTTGGTGCGTGAAGGGGCCGTGCGAGAAAGATGGTGTGATGGTGATGAGCAAAGAAAAGGCGACCGGTCTGAGATCAAGAGTTAAGGCTGAAGTGATCCCAACAAGAGATGATCCATCCGATTGTCGGCGAAATCACCGATGTTCCTAATCTCAAAGTGCCTCGAATAtgaagaggggggagagagagagcgagaggaaaaAGCACCACCTATGAATAACTTAAAGAGGGAGAGTTGAAGAGGAGATTTGTGGCGTAGGATCTATGAGTCAGCCAGCTAACTTTTGAACAGATATTTGTTGCAATCCCTGCGCATTATGTTGAGTTGATTAAGACCGAGTGAAACAGCTTTTAATAATTCatttttgcacaataaaatgtgCAAAAGTTGAGTTATTTTGCAAAGTTAGCTGGATAACTTCTTAATCCTGATTTATTTTAGGTTTTAGGAAATATAAATGATCAACAGAGAAGAGACCAGAGAGAGGGACAACAAAGGCAGGACCTTAAATCGCTATGGTTCATGCCGATACGCTAATAATCTGTCTAAAAATGCAAGATcacagcagtagcagcagcagtacaaAGCTAGGACAGTTTGGCTGTACGACATTTTATAAATCCAATTATGAGCATCACTTCTCTATGTTAAGTCTAGACTCTACACGTGTCTCACCCCTAGCTTAATAAAAGGCAGCTTCTTAAGCTTTTTACGTGAGAAAAGCCGTCTGAGAGATGTTATTGTTAAACAATTGCAGTATGTCTGgcaataatacataaaaaataaaaaaaaaaaggtggaggGTTGGTGATTGTGCAAGTTCAAAATGTTTCAGCGCATCATGAAAACCTGATATAATTCAGTGTCTAAAATATTTACAAGGTCTAAATGATAATAAAATGATATGCCAACAATGCAttgctttcaaaaatatatataaaagaaaaaaaatcaaaaaggaaCACAAAAAGCAGAGAGCGATTAAGAGCGCTACACCGCAGTTCTGCGACGCCTCTAACCCCATCCCAAATGTTGTTCATCGACTCTTATCAGAGAACAGGTGAGCAAATCCTAAACGAATGAACGTGGCGACACACTCACAccttacacacatatacacacacacatagtgatCCAACCACAGAGGAGGGCCCTGATTTCTTAGAGTTGCGTACCACGACAGCTCCCTGACCTAACAGCCGCCACCCCCGCAGCGGCTCAGCCTGTGGAGCGGCCGAGTCCGAGCCGCTGGGTGGGACTGGTGGCGCCCGCTGCCATGCTGTGTGTCCATATGGCTTTGGATGGAAAGAtcctagtctctctctctccgttttGTTCATGTCCTCGTTTTGCCTCAGTTGGTTTTCATGGTGACGTCTCGATTGGGCGCCTGctccccttcctcctcttcatctcccTGCTCGTTGTCGTTCTTCCTGCGCCGGTTCTCGTTCGGGTCCTCCTCGTCACTCTGAGCTGCGGCGGAGTTGGAGGCGATGGCGGCACCGGCGGCGGACGAGCCCTGAGCAGAGGAGGCGGTCTTTCTCTCCCGTCTCTTCTCGCCTTCGTTCTCCTCatcttctccttcctcctcatcatcatcctcctcctcctcctcctcctcctcttcctcttcctcgcGGTCGAGAGCGAAGTAGCCGGTGCCTTTCACCGTGTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309981 lncRNA downstream 19645 17272948 ~ 17275477 (-) True G228474
TU309936 lncRNA downstream 51142 17243465 ~ 17243980 (-) True G228439
TU309917 lncRNA downstream 72894 17221205 ~ 17222228 (-) True G228423
TU309887 lncRNA downstream 156847 17137270 ~ 17138275 (-) True G228401
TU309843 lncRNA downstream 285532 17007945 ~ 17009590 (-) False slc37a3
XR_005638072.1 lncRNA upstream 100050 17402248 ~ 17402832 (-) True LOC120552976
TU310039 lncRNA upstream 215465 17517663 ~ 17600185 (-) True G228522
TU310251 lncRNA upstream 1002387 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA upstream 1003362 18305560 ~ 18311747 (-) False LOC120553191
TU310249 lncRNA upstream 1061061 18363259 ~ 18369744 (-) False gramd4a
XM_039791154.1 mRNA downstream 60429 17222334 ~ 17234693 (-) False trim24
XM_039791152.1 mRNA downstream 60430 17222334 ~ 17234692 (-) True trim24
XM_039791151.1 mRNA downstream 60447 17222334 ~ 17234675 (-) False trim24
XM_039792328.1 mRNA downstream 74765 17212648 ~ 17220357 (-) False LOC120553673
XM_039792327.1 mRNA downstream 74767 17208626 ~ 17220355 (-) True LOC120553673
XM_039791853.1 mRNA upstream 4025 17306223 ~ 17331378 (-) True LOC120553454
XM_039791144.1 mRNA upstream 263373 17565571 ~ 17570648 (-) True creld2
XM_039791141.1 mRNA upstream 273940 17576138 ~ 17583883 (-) False zbed4
XM_039791140.1 mRNA upstream 273940 17576138 ~ 17583883 (-) True zbed4
XM_039792281.1 mRNA upstream 528418 17830616 ~ 17978041 (-) True tafa5a
TU309744 other downstream 471690 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1503269 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2206793 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2233693 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3485443 13809607 ~ 13809679 (-) True trnak-cuu_13
TU310227 other upstream 528474 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 528474 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1067477 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2136319 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 2141034 19443232 ~ 19443314 (-) True trnal-cag_19

Expression Profile