RNA id: XR_005638204.1


Basic Information

Item Value
RNA id XR_005638204.1
length 2587
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id LOC120553790
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17602192 ~ 17800250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGGCGGCCATTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGTGGAAAGGTCCATACCTGCCATAGGTGCTGCTGCCAACCAAGGCAACCTTTGGGTTGATGGGAGAGCAGAATGGGTCGATGCTTCAAGGTCCAGGCCGGTTCCCCCAACTGACAACAAGGAAGTGAAAAGCGATGGTGAATGAGAAGATGGGTCTTCCTCTTCGTCCTTCTGCTGAGTGGGTTCGAGCACGTGACTTGTCGAGGCAGGCGTGCCAGATGTTCCTAGCGGCCCGGGCTTTCCAGGCGCTTTTGGGTTTCGAGGAGTTTCGGTTGCTCCAGGAAACGAGAACCTTCGTTTTCACGACACAGGCTGTGTCACTGACGGCCACGCCGTGACGTGGAAAAAGGTTCTTTAAAGAATGTTTCGCGCCACAAAGGAACGACCAGCACTAAGAACCGCTTAGTGCTTGGCAACAAACTAAGGTTAAAAAACTTTGTTTTCAACAAGAAGAACAAAAGAGGACAATTTCACTAGAACAAGGAGGGTGTTGTATCTGCTCCTATTGTGTTTCAATGTCCTGTTGACAGATACAGTACAAAGTGGGTcattgtaatgttgcatttgcTTTGGTTCATTTTAGGAGAAGATGTTATTGGAATACTAGTTGTTACACCTCAAACGTAAGATATAATGATAGCTAAACTCTCCcatatctatattattattattattataacaattGATTAAACCCCATGTAGTGTTTGAAAAACAATTGAAAGATCTTTAATTGCAAAGTGTGAAAGGTTTATTATCACATAACTCAGTGAGAGCCAGTAAGCTGCAATACTCTTTTGATAGATGAAGGTGATGAAATTGACGAATTGCTCAAAAAAGTCTACTTTCCccaatttacacaataaaatccCAAACTGAAGCATCAGTGGAGAACTCACGAAAAATCCCAAACTGTGCAGACAACTAGTGCAATGAAAACAAAGTCAGTAATTGGCCTTATGTGCCAGAACGCAATTTAAGCGAGTAATCAATGCATTCTCCGGTGATTAATCCGATTTCAATTACAAACGGCGATTATAAAATTGTTTAATTAGAATGGTCTTATTTCTGCAACTGAGGAAGACACAGAATATTGTTACACCCATAGTTATTCAACTGATTTAACTAGATATTCCCGATTTAAGGAAACAGCTAAATTTGTTGCAAAAAAACTATTAATGACCAATATTTACCAACCGGATTTAAACACACTTTCCTTTTGAGGCACCCTTTAAGTCCAGCTTCATGTACAAATAGGTTTTGAGTATAGGGTCCAAATAGCGTTGGCCCAAACAAATTGTTCAAATCCTTCCAAAGATCAAATATGCACTTACTTTGCAAAGGTGTTAGCCCAAGCTTTGATCAATATCCAGCCATGGTTTGGATACACGTCTATAGGGTCAGTTTAAGTGAAGGTGTATAACTGAACGGTGCTGTCATAGAGCAGACAAATGCCCCTACGTGACGGTATAGTATATGTGCCACCAATTTTAGTGCATGAGTAACATAATGTCTTCCACTGTTTCCAAGGAATAGGGAAAAGAGCGCATGAAGATTTGGGACATAGTGATAGTGTTTCAGTAATGAATGTTGTTCTAAAGTGATCCCAGTTACTGTAAATCTATTGTGAGTAGACAAAGCCTATTGCTGCATACTTTATGACAAGTCACACGGAAGATGCCATTGGGCCTATTTAATCCCTCATTAGAACGGTAGAGTCTGCTGAAATAGCTGCTCTGTATAACCTAATTCCCAAGTACAGGAGAGAGAGCTCTCACAGATGTAACAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638182.1 lncRNA upstream 301174 17299723 ~ 17301020 (+) True LOC120553531
TU309875 lncRNA upstream 396554 17187926 ~ 17205640 (+) True G228392
TU309867 lncRNA upstream 463843 17137271 ~ 17138351 (+) True G228384
XR_005638158.1 lncRNA upstream 481610 17119099 ~ 17120584 (+) True LOC120553376
TU309855 lncRNA upstream 486851 17113825 ~ 17115343 (+) True G228375
TU310094 lncRNA downstream 563003 18363250 ~ 18368382 (+) True G228571
TU310105 lncRNA downstream 628878 18429125 ~ 18465053 (+) True G228581
XR_005638161.1 lncRNA downstream 681841 18482088 ~ 18485638 (+) True LOC120553397
TU310121 lncRNA downstream 733054 18533301 ~ 18534349 (+) True G228593
TU310137 lncRNA downstream 804746 18604993 ~ 18663972 (+) True G228605
XM_039791132.1 mRNA upstream 473 17584582 ~ 17601721 (+) True brd1a
XM_039791133.1 mRNA upstream 473 17584584 ~ 17601721 (+) False brd1a
XM_039791136.1 mRNA upstream 3717 17584579 ~ 17598477 (+) False brd1a
XM_039791349.1 mRNA downstream 474174 18274421 ~ 18313706 (+) True cerk
XM_039791713.1 mRNA downstream 729889 18530136 ~ 18533114 (+) True srr
XM_039791710.1 mRNA downstream 735482 18535729 ~ 18539427 (+) True alg10
XM_039792260.1 mRNA downstream 931457 18731704 ~ 18738370 (+) True LOC120553631
XM_039792261.1 mRNA downstream 931954 18732201 ~ 18738370 (+) False LOC120553631
unassigned_transcript_1495 other upstream 12031 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 679371 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 770951 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 770951 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 2404364 15168604 ~ 15197830 (+) False LOC120553256
TU310117 other downstream 729918 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 1610243 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 1658836 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 1831700 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 1831700 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile