RNA id: XM_039791713.1


Basic Information

Item Value
RNA id XM_039791713.1
length 1481
RNA type mRNA
GC content 0.47
exon number 8
gene id srr
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18530136 ~ 18533114 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGACTGGGAGCCGCAAAAAACGTAACACCGTAAACATTACGGTAAATCACTTTTTAAAGTAACGGAAAATTTCAAACAAATAATAAGATGGGTGAGTTTTCTGAAGAAGGCCTCACATTGGATCTGCTGAGGGAAGCCAGGGAGGTGGTGAGAAGCAGCCCCCTGGGTGTCATCAACACTCCCATGATCCCCTGGTGCCAGACAACCCTGCCTCTCGACATCCACTGCAACATCCACATCAAATTGGAAAACATGCAGAGAACTGGGTCGTTCAAGATCAGAGGAGTGGCCAATCAGTTTGCCAGGAGACCGAAGGGAGGTCATTTTGTCACCATGTCTGCGAAGAAAAATGGGAACTATGGGAAGGGGtgggggagggaaaaaaaaaaaaagggtaaaaaaaaagggggggggggccccggcccccccccccccccccccccccccttcttcctgggggttAGTTTCGGGGTGGAGGTGGAGCGGGTTCCTACCTCCTGTCTGATGAATGTGGTGAACCGCTGTGTTCAGGAGGAGAACATGACCTTCCTGCACTCCTATGATGATTTGGATCTAATAGCAGGACATGCCAGTCTAGGTATGGAAGTTCTGGAGGTGATGCCTGAGCCTGATGTGGTGGTGGTGTGCTGTGGTGGAGGGGGACTGCTGGCAGGTGTAGCTGCTGCCATCAAACTGTCAGGCTGTGATAAGACCAGAATCTACGGCGTGGAACCAGAAGGAGCCTGCACCATGTACAAAAGTTTCATTGAGAAGAAGCCAGTGGGCATGGACTCCCAGAGCATTGCCTCAGGACTTGCACCACCTTTTGCAGGCACACTGCCCTTTGAGTTGTGTCAGCGTTATGTGGAGGGTATTGTCCTTATAAACGATGaagagatcaaggcggccgtgTCCACCCTCTACCGGTCTGGACTTGTGGTGGAGCCGTCGGGCTCTGCTGCGTTCGCTGCAATCGTTAACAACAAGATACCCGAGCTGGAGGGGAAGAACGTGGTGTGCATCCTCAGCGGAGGCAACATCGGAAAAGACGAGCTTACCAACTTCCCAGACTGACGAATGTGCACTACCATAATGTGACTTTTCTTAGAGTAACACTGTGAAGATGAAAATCTATTCAGGTCAAAATGTTATCAGTACAACTAACTTTATGAGGAAGTCTCTGTTGTAACAGAATACTTGTTTGGGAAGTGCAGATGAATCATGATGAAATTAACATTCATTTTTTATAACCAAACTCTCTAGAAGAGTATTTTAAGTGCCACAATCTCAAGTCGATCAATATACATTTCATttcaatgtaattttgtttgttccagtgtgtgttttaataaacACCTCCAAAATCTCATTTCATTaagagtcaaaaaaaaaaactgaatgaaagtgaataaaaagtaaACATCCAGGTGCAAGTTAAGTAATGCTgtgacattttacatttctatTGGTTAGAGAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638161.1 lncRNA upstream 44498 18482088 ~ 18485638 (+) True LOC120553397
TU310105 lncRNA upstream 65083 18429125 ~ 18465053 (+) True G228581
TU310094 lncRNA upstream 161754 18363250 ~ 18368382 (+) True G228571
TU310030 lncRNA upstream 729886 17602206 ~ 17800250 (+) True LOC120553790
XR_005638204.1 lncRNA upstream 729889 17602194 ~ 17800247 (+) False LOC120553790
TU310121 lncRNA downstream 187 18533301 ~ 18534349 (+) True G228593
TU310137 lncRNA downstream 71879 18604993 ~ 18663972 (+) True G228605
TU310143 lncRNA downstream 143237 18676351 ~ 18677565 (+) True G228611
TU310155 lncRNA downstream 205370 18738484 ~ 18739484 (+) True G228622
TU310196 lncRNA downstream 316933 18850047 ~ 18855314 (+) False LOC120553630
XM_039791349.1 mRNA upstream 216430 18274421 ~ 18313706 (+) True cerk
XM_039791132.1 mRNA upstream 928415 17584582 ~ 17601721 (+) True brd1a
XM_039791133.1 mRNA upstream 928415 17584584 ~ 17601721 (+) False brd1a
XM_039791136.1 mRNA upstream 931659 17584579 ~ 17598477 (+) False brd1a
XM_039791710.1 mRNA downstream 2615 18535729 ~ 18539427 (+) True alg10
XM_039792260.1 mRNA downstream 198590 18731704 ~ 18738370 (+) True LOC120553631
XM_039792261.1 mRNA downstream 199087 18732201 ~ 18738370 (+) False LOC120553631
XM_039792259.1 mRNA downstream 289718 18822832 ~ 18854640 (+) True LOC120553630
XM_039792255.1 mRNA downstream 298382 18831496 ~ 18854640 (+) False LOC120553630
unassigned_transcript_1495 other upstream 939973 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1607313 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 1698893 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 1698893 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 3332306 15168604 ~ 15197830 (+) False LOC120553256
TU310402 other downstream 877376 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 925969 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 1098833 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 1098833 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1449134 19982248 ~ 19985648 (+) True G228924

Expression Profile