RNA id: TU310143


Basic Information

Item Value
RNA id TU310143
length 292
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G228611
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18676351 ~ 18677565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCGCTGGTCTTTCTTCAGAGAGGCGATCTCCCTGTTCCTCCTGCACTCTGTGACTCGGTtcctctcctgctgctccttcATCTGACGCATCAGCGCCACCTTGGTCTTCTTCATCTCGGTCACATCCAGCTGGAGTTTCTTGAGCTGCTTCTCGTACTGCGACTGGTTCTTCAGCAGGCGGGCGTGCTCCTTCTGAGCCGACTGGAGCTTCTGCAGCTCTTTGTTCATGGAGCTCAGCTTCCTCTCGTACTCAACTTTGATCTTCTTGGCCTTCTCCTCCGTGCCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310137 lncRNA upstream 12379 18604993 ~ 18663972 (+) True G228605
TU310121 lncRNA upstream 142002 18533301 ~ 18534349 (+) True G228593
XR_005638161.1 lncRNA upstream 190713 18482088 ~ 18485638 (+) True LOC120553397
TU310105 lncRNA upstream 211298 18429125 ~ 18465053 (+) True G228581
TU310094 lncRNA upstream 307969 18363250 ~ 18368382 (+) True G228571
TU310155 lncRNA downstream 60919 18738484 ~ 18739484 (+) True G228622
TU310196 lncRNA downstream 172482 18850047 ~ 18855314 (+) False LOC120553630
XR_005638160.1 lncRNA downstream 214609 18892174 ~ 18897527 (+) True LOC120553383
XR_005638159.1 lncRNA downstream 227671 18905236 ~ 18908881 (+) True LOC120553381
TU310389 lncRNA downstream 675439 19353004 ~ 19355518 (+) False LOC120553164
XM_039791710.1 mRNA upstream 136924 18535729 ~ 18539427 (+) True alg10
XM_039791713.1 mRNA upstream 143237 18530136 ~ 18533114 (+) True srr
XM_039791349.1 mRNA upstream 362645 18274421 ~ 18313706 (+) True cerk
XM_039791132.1 mRNA upstream 1074630 17584582 ~ 17601721 (+) True brd1a
XM_039792260.1 mRNA downstream 54139 18731704 ~ 18738370 (+) True LOC120553631
XM_039792261.1 mRNA downstream 54636 18732201 ~ 18738370 (+) False LOC120553631
XM_039792259.1 mRNA downstream 145267 18822832 ~ 18854640 (+) True LOC120553630
XM_039792255.1 mRNA downstream 153931 18831496 ~ 18854640 (+) False LOC120553630
XM_039792256.1 mRNA downstream 153931 18831496 ~ 18848610 (+) False LOC120553630
TU310117 other upstream 145183 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1086188 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1753528 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 1845108 16771058 ~ 16831243 (+) False cald1a
TU310402 other downstream 732925 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 781518 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 954382 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 954382 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1304683 19982248 ~ 19985648 (+) True G228924

Expression Profile