RNA id: XM_039792281.1


Basic Information

Item Value
RNA id XM_039792281.1
length 2771
RNA type mRNA
GC content 0.46
exon number 5
gene id tafa5a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17830616 ~ 18100995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgtctctacccatCCGTTCTCCATTCCCTCCTGCAAGCATGCTGTGATCCTCATCTACTTCGTTCCCAAACCGAGAGCTTAAAGGACTCCCCCCTTctccccccctctttttttcgaccaactctccttcatcCACCCAGGCGTTTACTCGGCGGATTTTATTGGACCGCGTCTATTTTTCAACCCGGTCTTTGGGCTTTGCCGTCGGGGCTCGTGAGGCTGGAGAGAATCGAGAAAACCTACCACAGGTGAAAGGAGGCTTTACGACGCTGCGGTATAGATGATTGAACACTTTGAGCATTAACTCAACGGCACCAGCGCACAGCGCGTCCTTTTACTAAAAAATATAGGACGGGAAATTTGAACACACTTTGGAACAACTAAAGGGACGTTTACCAACTTGTGTTTCTGGacgaatagaaaaaaaaaaacactgcgtTCATTTCCTAACTGAGATTCCTATGGAATATGTGACCTTTTCTTTTGCGCACCTTCAATCCGAGGAGCAAAGCATTGCTTTTCTATCAGTTGCTCCATCCTGACATGTCTTTTTTGTGTGGAATTACACGCGGAGATATGAGCATTGTGAGAGGCCGAGCTGGGTTGTGAGATTACCATCTTTTGCTTGTTATTCGTCTCGTCAAAGAGGAAGTGCTCAGTTTGTTCAATGGCTTCAGTGTCAAGGTTGGCAAGACGCAAAGATGCCAGTCGCTGGCCGAGAATGTCGTCAACTTTCTGGGCTGTGGTGCTTCTGACAGCGCTGCTGGTTCTCTACTGCGGCCAGCTGGCAGCGGGGACATGTGAGATTGTGACGCTCGACAGGGACAGCAGCCAACCACGGCGGACCATCGCCAGGCAGACAGCCCGCTGCGCCTGTAAGAAGGGCCAGATCGCTGGAACTACAAGAGCCAGACCTGCCTGCGTGGACGCTGGTATTGTTCGGAAAAAGCAGTGGTGTGAGATGGTGCCATGCTTGGAGGATGAAGGCTGTGACCTGTTAGTCAATAAATCTGGCTGGACTTGTACACAGCCTGGAGGCCGAGTCAAAACCACCACGGCTCTATGACGTGACAAGAGTCCCCTTCGACACTCTTGCACTATGGAGAGCATTGATGACCCCTTGACAGACAGCCAAAAACCATCTGCCAACACCACCCTaccaccactaccaccaccatcatcacaaCAACTCCACCCAAACCCTGGTCCCGCAAAGGCAGGAAGCAACACAAGCAGTTACAGAGCACCGAGGGCCTCATGGAGGCAGCAAGGTCTCATAACACAGCCAGAGACCGGAAAACCAGGGAGCGACTGTTTGAGGGAGCAAGCTTTCTCCTGGACACTGGACAACTACTCGCTGTAAAACACTTTCCATTTCCTGTGACTGGCCCCTCCGGATTTGTGACTGCTCCCTCCTGCTATCTGTCGTTGGGTCAAAATGTTGCGATCACCTCCTCTTCACTATCCTGCTCGTGCCACAGAGGATCGGACTCTTTAAAAAATCCCATGAATGGTTTTTGCCGCATCGGAAGTACTGTGTTTGAAACGGCTAACTGCTTTGAATACAGGATTTTCCAACACCTCTCTCCTAGCCTCTAGAGCAGGAATTCCAGAGCAAAGACGGGATCATTACAGACCGGACGCTGTTGCTTCGCGGACCACTTTATGAGgctgttaaaaaaattaactgAGCGCTCTCTGCTGTGAATAGGCCTTCTGCTGGAGTAAACCTCCCATATTTTTATAGACCAAAgagcaaaacaacaaatacgATCATAATGACGGAGTGGACCATGTggtaaagacacacagagactgtGAACTTGCCGTTTGTGTCGCCACCGACCAACGACTGCCCCCACAGAGACATGGTGCACCCGTGGACCGACGCAAACCGAACCTGCCGTCCGGTGGCACATGTACCGTAGTACTTTTAAAACTTTCCAGACATTTTTTTCTCAGACTAAGCCCATCACTGTATTTTGGAACTGGAGATATAGGTACTACATATGTATAACtgtgtatgaaaaaaaaaatctgatttgcaTTTTTCAGTAGCTACTGTTGGGAAAGCTTGCAGAGGCATTGTCAAGTTGGTCACGGACCAGGAGCGCAAATCATATCAAAGAGATGATGAATATCTACAGAGTATGAATGCTATTGAGTCTGAAAAGGAGTAAAGAAATGTcattaaatgtattttgaaaggCCCTAAAAAGTTAtatatttaacagttttatatGTTGTACCTTTGTAGAGAAGCTTATTGGACTTAAAATGTGGTCACAATGGCAGTTTAGTAGGATGTGAACAAATGCTGTTGTTCTCATTACTGCTGGCTCGTAGTCCCAGGTTTTCTGTTCACACCTCAGTAGCTGCTTTCTTTTCATGGTCATCTACAAGTCACTGTCTATTAGAACCAttaatgaaaaaaaggaaagtgaCACAATTTATTGAGGACTGATCTGCAGCCAACTGAACATTGTAAATCTATGGTAGTCAGTGGAAGCCATTGAAATCTGCTAATTTGCTATGATATTGTATTGTACACGGTGTGGAATACTGACTCATTTCCTCTCTATGGGTTTTGATctcttaatttatttttgtgcttGTGTTTGTTCTCGCACAAATCTGGCCTCTCTCTGACAGAGACGAATACaacaaggagagaaagaaagcagaGGAAGCATTGCAGTATTAGAGTCAGTTACATACATTTTCTATCATGAAATATTTTAAGAAtaaattaaatacataaaaagaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310039 lncRNA downstream 230431 17517663 ~ 17600185 (-) True G228522
XR_005638072.1 lncRNA downstream 427784 17402248 ~ 17402832 (-) True LOC120552976
TU309981 lncRNA downstream 555139 17272948 ~ 17275477 (-) True G228474
TU309936 lncRNA downstream 586636 17243465 ~ 17243980 (-) True G228439
TU309917 lncRNA downstream 608388 17221205 ~ 17222228 (-) True G228423
TU310251 lncRNA upstream 326544 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA upstream 327519 18305560 ~ 18311747 (-) False LOC120553191
TU310249 lncRNA upstream 385218 18363259 ~ 18369744 (-) False gramd4a
TU310257 lncRNA upstream 578012 18556053 ~ 18558509 (-) True G228684
TU310256 lncRNA upstream 580560 18558601 ~ 18559279 (-) True G228683
XM_039791141.1 mRNA downstream 246733 17576138 ~ 17583883 (-) False zbed4
XM_039791140.1 mRNA downstream 246733 17576138 ~ 17583883 (-) True zbed4
XM_039791144.1 mRNA downstream 259968 17565571 ~ 17570648 (-) True creld2
XM_039791853.1 mRNA downstream 499238 17306223 ~ 17331378 (-) True LOC120553454
XM_039791154.1 mRNA downstream 595923 17222334 ~ 17234693 (-) False trim24
XM_039791347.1 mRNA upstream 156043 18134084 ~ 18270751 (-) True tbc1d22a
XM_039791348.1 mRNA upstream 156043 18134084 ~ 18270751 (-) False tbc1d22a
XM_039791423.1 mRNA upstream 385647 18363688 ~ 18421404 (-) False gramd4a
XM_039791425.1 mRNA upstream 385647 18363688 ~ 18421403 (-) False gramd4a
XM_039791422.1 mRNA upstream 385647 18363688 ~ 18421403 (-) True gramd4a
TU309971 other downstream 528418 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1007184 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 2038763 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2742287 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2769187 15060003 ~ 15061429 (-) False znf800b
XR_005638136.1 other upstream 391634 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 1460476 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 1465191 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 1468980 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 1470023 19448064 ~ 19448146 (-) True trnal-cag_21

Expression Profile