RNA id: TCONS_00072875



Basic Information


Item Value
RNA id TCONS_00072875
length 867
RNA type processed_transcript
GC content 0.44
exon number 3
gene id XLOC_037020
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15567364 ~ 15571007 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCGCTGCGGAGACTGAACTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCACAGTAGGAGCAAACATGCCTTAAGAAAAGGAGTACGTTTGAAACTTTAGTAACCATAAAAGGACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCTGCAGCCTGTGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATAGCTGTTGTGATGGAGCTGGACCTGTAGACAAGGGAACTAACAcatttgagaaaaaataaaatccaaaataaGAGattGGTGTGTGTGGTGAGGGTAAAGAAGTCCACAGCAGCATCTTGGAAATGCTGtaatgcaggggtgcccaaactcagttctggacggctggtgtcctgcacagtttagaaTCAACTTCAACTAAACTCTGCAAGACAGCAGCAGTTCTGGACTGAGTTTAGCCACTCCTGTTCTCCTGTAGTGAACTGAACGAGACCCTGCATCAGTCCACATGCCCTTGTGTCCTCATCTGGACCAGATGTTGCTGTGGTCTCTTCATCATCCGTATCTCGGGCATGGACTGCCATGCATCACCGCCCTGTTTCAGTCTGACTGCAGCAATGAGGGATGTGATGATGGCGAAGTCCCTCTGATCATCTGCAGAACTGGCCCAGCTGTGTGAAGATACAGCAAAACATGGGCTTCTGTCTGTAATACATCACTGTTAGAATAAAGCTTGGTTTCATGTGTTGTTGACTTGTATTTATTTGTCATGATTACTCATATTCattcttttaataatataattatgtttctgtttgttttcaataaataatgataatagtttCAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000137732

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00075076 lncRNA upstream 36674 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA upstream 37907 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00072873 lncRNA upstream 1369861 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075075 lncRNA upstream 1450364 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00075074 lncRNA upstream 2095837 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00075078 lncRNA downstream 321483 15892490 ~ 15893112 (+) False XLOC_037022
TCONS_00072880 lncRNA downstream 330519 15901526 ~ 15906907 (+) True XLOC_037023
TCONS_00074888 lncRNA downstream 1204980 16775987 ~ 16776615 (+) True XLOC_037028
TCONS_00075079 lncRNA downstream 1655237 17226244 ~ 17227294 (+) True XLOC_037030
TCONS_00072887 lncRNA downstream 1738051 17309058 ~ 17311681 (+) False XLOC_037031
TCONS_00072874 mRNA upstream 1270232 14291932 ~ 14297132 (+) True XLOC_037017
TCONS_00072871 mRNA upstream 1526077 14028157 ~ 14041287 (+) True XLOC_037013
TCONS_00072869 mRNA upstream 1528589 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA upstream 1534237 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072868 mRNA upstream 1539362 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072876 mRNA downstream 266391 15837398 ~ 15841997 (+) True XLOC_037021
TCONS_00072877 mRNA downstream 319551 15890558 ~ 15892666 (+) False XLOC_037022
TCONS_00072878 mRNA downstream 322086 15893093 ~ 15894307 (+) False XLOC_037022
TCONS_00072879 mRNA downstream 322234 15893241 ~ 15894501 (+) True XLOC_037022
TCONS_00072883 mRNA downstream 670649 16241656 ~ 16248098 (+) True XLOC_037026
TCONS_00072872 other upstream 1420211 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072867 other upstream 1553034 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072865 other upstream 1564111 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072861 other upstream 1780411 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072854 other upstream 1838428 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072881 other downstream 336026 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072882 other downstream 411337 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072889 other downstream 1746160 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072896 other downstream 2091943 17662950 ~ 17663065 (+) True XLOC_037038
TCONS_00072903 other downstream 2417459 17988466 ~ 17998476 (+) True XLOC_037040

Expression Profile


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