RNA id: XR_005638136.1


Basic Information

Item Value
RNA id XR_005638136.1
length 2231
RNA type transcript
GC content 0.53
exon number 19
gene id gramd4a
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18363259 ~ 18421407 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGTCCAGCCTCTGAAGCATCATTTACCGCTAACGGCCCCTTTAAGAAAGCAGCGCCGAACACTGACGAAATGTCCTCGGCCCAGCTCCCTGCCCGTTTCTGCGAGATCAACAAGACGAAGGCAAGCTAACGTTTAGTATCTGCAAGCTCCGGGCGAACGGTGCTAGTCAGGGCAGCTCTCTCCAGTCCAGACAGGAGGGAGACGCAACTGGTATCTTTTTCTCAGTGTTTGCCTGCCTAACCGCTCAACGCTCAGCGGGAGACGGAATTTAGCGAGTCGGTGGACAGACGAGCGGATATCGTTGGGGATGGATGGACCAAGTGAGCAGTTTTCGCCGTCGTGAGACTGGCGCTAATTTGGACGTCCTGAGCAGCAGGTGTACTGAAAGATAAAGCAGACTAAAGGCAATCTCAGTGTTCATGAAACTTTGCTACGATTTACGTGCTGGGGTTGCCGTCAGCCATGTTAAGGTAAAGCCCAGGTGCGCGGTGTTGACCATGCTAAAGCGCCTGGACAAAATCCGCTTCCGAGGCCCCAGGACGAGAGACGACTTCCCGGATCTGGCCGAGTCGCCGCCTGCCTCCGACAACGAATGTAGCGACGACATGCAGCTGAAGCCCAGAACAGCTCTGCGCGACACAGAGGAGCTCCTGCGAGACCCTgcaGGTTCGGGGTCTCCTACCATGGCTGCGGCCATCCAGGACTTCCAGAGGTCGGAGTCGGACAGACTCAATGAAGTCAAAGGTCACCTGGAAATTGCCTTATTGGAGAAACATTTCCTACaggaggagctgaggaAGCTGCGGGAAGAGACCAATGTGGACTCTCTGCGGCAGGAGCTGGAGAGAGAGCGAAGCAAGAGGATAGACCTGGAGCAGAAGATGAACGAGGTGCTCAAGACCagGCTGGAGGACTCTCCACCACAGCCTCCCCGGAAACAGCAGTCCCCCTCAAACAATGGAACAGCAGATAAACAGCAGAAGGAGGTCTGGAGTTCACGGCTGCAGAAGTGGCTGTACGAGCGTTTCGGGGTTTACATCGAAGACTTCCGCTTCCAGCCGGAGGAAAGCACCGTGGAGGCCGAGGAACCACTAAGTGCTAAAAGGTTAACAGAAAATATGAGGCGACTCAAGCGAGGAGCCAGACCTGTCACCAACTTCTTAAGGAACCTCTCCGCCTTATCTAATTGGCACTCTGTCTACACCTCAGCTATTGCATTCATTATCTACATGAATGCTGCTTGGCATGGCTGGGCCATTCCTATGTTACTCTTCCTGGCTATCCTGCGCTTGTCTTTAAATTACCTCATCGCCAGAGGTTGGAGGATCCAGTGGAGCATTGTGCCTGAGGTCTATGAACCCATGGAGCCTCCAAAGGAAGACTTGACAGTATCTGAGAAGTTCCAGCTTGTACTTGATGTTGCACAAAAAGCGCAGAACCTTTTTGGTAAAATGTCGGATGTTTTGGAGAAGATAAAAAACCTGTTCATGTGGGTGCAGCCGGAGAGCACCCGGAAACTTTATATCTGCCTGTGGGTGGCTTTCATCACCTCCTGCGTCCTACCATACAAACTTATGGGCTTCATGATGGGCCTGTACGCCGGTATCAAGTTCTTCATCATAGACTTCCTGTTCAAGAGCTGTCCGAAGCTGCGCGACAAGTACGACACACCCCACATCGTGTGGAACAGCCTTCCCACAGACCCTCAGCTCAAAGAGAGGACCAACGCCACTGTGTCGCGGCGGctctctGGCATTGAGAAGgtTCAGCCAGTGGTTTCCCGGAGCAGCCTCGCCACCATCCCATGTGGGGTGAGCAGGGAGGAGGAGACGGGTCGCTCCCACAGCACCAAGAAGGGAGCCTTTTATGAGATCTTCAACCTGCCGGAGCCAGAGCGCCCTCTGGCGGtttgtgaGAACGGCTGGAGGTGTTGCCTAATAAACAGAGACAGGAAGATGCCCACAGACTACATCAGGAACGGCATGCTCTACGTCACAGAGAACTTGCCTGCTCGTTTCTCCTCAAGACCCCTTTCAGCGAgctcttttctctctcattctctacGTCAGTTACCTGTGCTTTGAGAGCTCCAGCTCCAGATCCAACTCCTCCAAGAAGAATAAAGTTATCAAGCTTGTGGACATCACTGACATACAAAAGTACAAAGTGCTGTCAGTCCTACCAGGAAGTGGGATGGGCATCTCTATAGCTACTCCTTCCACTCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310251 lncRNA downstream 22678 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA downstream 57928 18305560 ~ 18311747 (-) False LOC120553191
TU310039 lncRNA downstream 769490 17517663 ~ 17600185 (-) True G228522
XR_005638072.1 lncRNA downstream 966843 17402248 ~ 17402832 (-) True LOC120552976
TU309981 lncRNA downstream 1094198 17272948 ~ 17275477 (-) True G228474
TU310257 lncRNA upstream 134646 18556053 ~ 18558509 (-) True G228684
TU310256 lncRNA upstream 137194 18558601 ~ 18559279 (-) True G228683
TU310292 lncRNA upstream 316989 18738396 ~ 18739510 (-) False LOC120553633
TU310303 lncRNA upstream 459754 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 472233 18893640 ~ 18975820 (-) True G228731
XM_039791347.1 mRNA downstream 98924 18134084 ~ 18270751 (-) True tbc1d22a
XM_039791348.1 mRNA downstream 98924 18134084 ~ 18270751 (-) False tbc1d22a
XM_039792281.1 mRNA downstream 391634 17830616 ~ 17978041 (-) True tafa5a
XM_039792282.1 mRNA downstream 441796 17830616 ~ 17927879 (-) False tafa5a
XM_039791141.1 mRNA downstream 785792 17576138 ~ 17583883 (-) False zbed4
XM_039791744.1 mRNA upstream 7700 18429107 ~ 18523877 (-) False celsr1a
XM_039791742.1 mRNA upstream 7700 18429107 ~ 18523877 (-) False celsr1a
XM_039791745.1 mRNA upstream 7700 18429107 ~ 18523876 (-) False celsr1a
XM_039791746.1 mRNA upstream 7700 18429107 ~ 18523876 (-) False celsr1a
XM_039791743.1 mRNA upstream 7700 18429107 ~ 18523876 (-) True celsr1a
TU310229 other downstream 268680 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 441970 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1067477 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1546243 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 2577822 15771238 ~ 15791853 (-) True G228191
unassigned_transcript_1496 other upstream 1017110 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 1021825 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 1025614 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 1026657 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 1030581 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile