RNA id: TU310292


Basic Information

Item Value
RNA id TU310292
length 1115
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC120553633
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18738396 ~ 18823090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaCATATTTGCATTTCACCTGTGAtggaatgttattttttttactatcaTTTCATGTATTTGATTTGGGTCTTCCTCCATAGCCTTACGTACAAATAGCAGAGCATATCATCTATGTGGTTCTCGTGTCAAAAGTCGAGGAGTAGGCTTTAGCGTAATTTGCCaatgttgttttgtaaaaaaaattgtgaaattgTGTGAGGTTACACCTTGTTAGTCAAATACACATGTGTAATATCTGTGTAGCAAAAAAACTGTTTGAAAGTAGACTACGGAGTAACGTCGTGTAACCAAACCAAACAGGTGAATGAACAGGCCTGCGCTGTCAATGTGTCCAATGAACAGGTGAAGGACAGTCCATCATTTCTGACACGTGGGTCCTAACCCTATCATCATTTAATAAGATATGATacctctttttaataaacttttCAAATAAGAAGCTGTTTATCGAATACCGTGGCACAATGTAATGACATTTCCAGTGCCAGTCAAGTTGAATGAAGTATCTGCAAGTATTGTGATATGTTTGGTATTGTCAAGGTGTCCCCTTTACATATGGACGCTTATGAAAGCAATTAATGAGTAGAACAGGAATTAgtgccattttatttatatatttaagacTAATAAAATGACTTACAGTTTAAAGGTGGGCGAAAGATGGCTGACTAGAATTCAAAATGTGAGGGTATTATTTTATGTTAGATTTGCATCTGGTCCAGGATGtcttacaaaaaaacacacaaactagttttgtacttaaagtattattCCAGTTAAAACGCACACAGATGAAGCTCCATAACAGTGTGTAATTAAACTTGTGTTGACCAAATATTTGGCGTGATTGTTTCAGCTGTTGACATCCAGTTGTGTTAACACTGTCCTCTACCGCCGCGGCGGGGACATTTAATGTGTACTTCTGGTGAAATTCTTTTCTATGTGTGTTTCTACAGTTTATGAGGAACCGCaaaaaataccaataaaaaacaaaaaagtgctGTATAGTATATTTGATTATTGTTCAAGCTGTATATGTTTTGCTAGAGTTTATattctaaataaaaataaatatcttcATGAAATCTTAACACTAGAATATGTATacgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310256 lncRNA downstream 179117 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 179887 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 368652 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 391399 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA downstream 426649 18305560 ~ 18311747 (-) False LOC120553191
TU310303 lncRNA upstream 141651 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 154130 18893640 ~ 18975820 (-) True G228731
TU310370 lncRNA upstream 275145 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 422507 19162017 ~ 19270336 (-) False sox5
TU310454 lncRNA upstream 587111 19326621 ~ 19328343 (-) True G228824
XM_039792262.1 mRNA downstream 6730 18711014 ~ 18731666 (-) True LOC120553632
XM_039791682.1 mRNA downstream 33159 18667121 ~ 18705237 (-) False LOC120553351
XM_039791680.1 mRNA downstream 33159 18670449 ~ 18705237 (-) False LOC120553351
XM_039791681.1 mRNA downstream 33159 18670579 ~ 18705237 (-) False LOC120553351
XM_039791679.1 mRNA downstream 33159 18670579 ~ 18705237 (-) True LOC120553351
XM_039791407.1 mRNA upstream 289099 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA upstream 289099 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA upstream 289099 19028609 ~ 19270239 (-) False sox5
XM_039791405.1 mRNA upstream 289099 19028609 ~ 19270239 (-) True sox5
XM_039791413.1 mRNA upstream 289099 19028609 ~ 19116957 (-) False sox5
XR_005638136.1 other downstream 316989 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 637401 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 810691 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1436198 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1914964 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 699007 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 703722 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 707511 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 708554 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 712478 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile