RNA id: XM_039792263.1


Basic Information

Item Value
RNA id XM_039792263.1
length 5050
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC120553633
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18738396 ~ 18823090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACTGACAGCTAGTCTtgacataaaaaacaacatgttgttttttatgtcaAGACTTAAAAGGCTAGTTATGGCTAAAGTGTCAGCAAGCAGTTGCCTAAAGTTAACtttaagttaacgttagctagctagctacttagctagctacatttaGAAGACTTGGAGGAACATACCTGGAATCCTGTTTTTTTGCCACCAGCAAaagtaagtccaatattcactgtCCATTTCTCACTGGTTTGGTCTTCACAAACTCCAGGGAAATATAGCTAGCTACCTGGGTCTTTTAGCTGGTGGCTTTCGACTTGTTTTCGACTGTTcaccagctagctaacgttaaattgCCATTTGTGCTGGACAtgaaacgttaacgttagcatacagaagatttatcagtttttttgttgctaAAACAGCTTAAAGCTACTGTTACCTGCTGCTGGAAACAAGGTTAATCAGAGCGAATCTGGCCAGTAGTTGTCAAGTGTAAGACGGATCGACAGAATGACTGACGCACATCACCACCCTTGGGCCCTGGTACTCAGCTGGAGTCACAAGGTCGACCATGACTACAATCTCCGTAGTATGAGCAACCTGATGGGCGAGCGGTGGAAGAAAGTGAGCGACGGAGGAGAGCGGAGTCTGATCAAGGCTCCGTCCAGCGCCAGCCTCAGCAGCCAGGGCGCCTCCGCCGCGACCTCCACCGCAGGTGCGCCAGCAGCACCCACCACTTCCACCGGGGACCTGGAGAGGGCTGCCCGCAAGCAGTTCCAGCAGGATGTCACGCCCGGCTTCGTCTACGTCCTGGCCGCGTTCTCCGCCCTGGGGGGCTTCTTGTTCGGCTACGACACCGGGGTGATCTCCGGGGCGATGCTCCTGCTGAAGAGGGAGCTGGACCTGAGCGCTCTGTGGCAAGAGCTGCTCATTTCAAGTACTGTGGCCGCGGCCGCCCTGTCTGCCCTGCTGGGCGGCTTCCTCAACGGGCTCTTCGGGCGCAGAGTTTGCATACTGCTGgccagcttcttcttctccgtcGGTGGGATCGTGTTGAGCACCGCCCCTGGCAAAGAGGTTCTCCTGGCGGGGAGGCTCATCGTCGGAGTCGGGCTTGGTATTGCCTCTATGACGGTGCCAGTGTACATCGCCGAGGCCTCTCCGCCCCACCTCAGGGGTCAGCTGGTGACGGTTAACACCCTCTTCATCACCGGCGGGCAGTTCACCGCCAGCCTCGTCGACGGCGCCTTCAGCTACCTGCAGCGCGATGGGTGGAGGTACATGTTGGGTCTGTCGGTGCTTCCCGCCGTGCTCCAGTTTGTGGGATTCCTGTTCCTGCCGGAGAGCCCTCGCTGGTTAATCCAGCATGGGCTGACCCAGAAGGCCCGCCGCGTGCTCAGTCAGATCCGAGGAAACCAGAACATCGACGAGGAGTACGACAGCATCAAGAACAGCATCGACGAGGAGGACAGCGGAGGAGATGGCCCTGTGATCTGGCGAATGCTGACCTACCCCCCCACTCGGCGAGCCCTCCTGGTTGGCTGTGGTCTTCAGATGTTCCAGCAACTTTCAGGAATCAACACGGTCATGTACTACAGCGCCACCATCCTGCAGATGTCAGGAGTGCGGGACGACAGGCTGGCCATCTGGCTGGCTGGACTCACCACCCTCACCAACTTCCTGTTCACCCTGCTGGGAGTGTGGCTGGTGGAGAGAGTGGGGCGCAGGAAGCTCACCTTGGGCAGCATCATAGGTACATGTTTGAGTTTGAGTCTGCTGGCCATCGGTTTTCTGATGTCCGCCCAGCACAGTCCTCCTGTCACCTTCCACCCTTTAGACCCATCTATGGCCAACTCTACCTGCTCCAAATACCAGCTGTGTGAGCCATGCATGCTGGACCCTGGATGTGGTTTCTGTTACCGTGAGAACAGCTCAGCGCTCCTCGCCTCCTCCTGTGTGCCAGTCAATAAGGCCTCCACCGAGCAAGCAGCATGGGGCAGATGCTCCAACTCCAGCCTGGTGAGAGATGAGACCTACTGGGCCTACAACTACTGTCCCACCTCCTACTCCTGGCTGGTTCTACTGGGTCTGGTCTGCTACCTGGCTGCTTTCGCTCCAGGGATGGGTCCGATGCCGTGGACCATCAACTCTGAGATCTACCCGCTGTGGGCGAGGGGCACCGGGAACGCCTGCGCAGCCGGAGTCAACTGGACCTTCAACGTCCTGGTGTCTCTCACCTTCCTCCACCTGGCTCAGTACTTCACCTACTATGGAGCTTTCTTCCTCTACTCCAGCATGGCTTTGCTGGGTTTCTTCTTCATCTACGGCTGCCTGCCGGAGACCAAAGCCCGGCGTCTGGAGGAGATCGAAGCGCTGTTCGAAAACCAGCTCTGTTCCTGCGGCGCCTCCGATTCGGACGAGGGACGGCAGGTCGAATACATCCGAGTCAAAGGTTCTAACTACCATCTCTCGGACAACGACGCGTCCGACGTGGACTAGAGAGAGGTTTTCCGTTAGCTTCTGTGATTACTGAAACAGTGCAGAGTGTCGCGtggtatttttctttctttttttgtgcgtgcgcgtgtgagCCGAGGAGCCGCTGCTTACCCTCGCTATGAGGTTCAGAATCCCAGCTTGCTTGTATCATTAAGTCGAGCGAGGTTCACTTCCAATTCAGGAATCCAAAAATCACCGACAAGTCGAGGACATGTCAGCCTATTCTCTGAATTGAGGGTGAACCGATGCCAAATCTGGAGTCAAACCTGCTTTAGTAGACCGCTGCGTCTTCAACCACGCACCACAAATATCTCAATTACGAAAGGCTAAAACATTGCCTTTTTTCACACATAacagtagtgttttttttttcgtgaACACTtggacaggaaacacacactgCATGTACAAAATACAAGGGGCATTTTCCTCTCTCACGAAGTCCACCGATGGTGATGTACGTTCCAAAAGAGGCCCCAGCTCAGTATCAGACTCATATACTGAGCTGGGGCCTCTTTTGTATTAGGAACATATTACTGCTACTATCAGTAATATGTTCCTAatattttgtacatttgttgactaaatatattttatgatttatttaccATGTTGTACGTACAGTATACAAAGTAAAAAGTGATCCAGCCATCCTACAGCATTGTGTCAGAAGATGTGTCCATTTAAAGATACAGTAAAGATGGTCTTGAAAACCAGGTTTGTGCGCCCACAAAACCTTTGTTGACATGACAGCAGTTGTGACTTCTTGTCGACCTGTAGTACCATTATGCCTTTCTATATGAAACACATCTCAGTTACATGTTGTTGAAGCTTGTAGCATAGCACACTCATGTCAGTTCCTCATCTGATGACAGTCTTCGTTTGTGGTTCTGATGTCTTTTTATGAAAAGCAAACACCAGAGATGTAcagtatttattgttttaagtttagaaaacaAAACGTGAATTGTCAGTTGGTGCCTAAACAAAACTCACCAAACTCACCAATCTAGTAGCACTGAAAGGAATAAAAGTTCTGTTGCTATAGTTtatatttattaatgtattcatttaaatATGTGTTGCCACAAAGTACTAATTGCTTCAGCctgaaactttaaaaaaactacaTAGACTatctatgtttttatttttattttttaagtttcagGCCTGCAATTCTTTTGCATACCTGCCTCTAAAAATAGCCGTTTTTAACATTCGATTATACTATGGCGAGTACAGCCTCATGTCACTCTGTTACTAGgttgccaaaaaaaacaatatgagCCCATGTTATCAACCTGGGTATTAAACGTGTAATGTCCACTACCTAAAACCATGGTTTTATGACTGAGActtgtatttgaagtatttcattctAGCCTAAACATGATTATATTAGTGCCTGTGTATTGTGAAGGTCCCTTATGGCCGTTTTTCAGTCCAAATCCCTGAAGTGGATGTTTTACTGTATATCATGTTAGATAATTAAGTCagcattgcttttttttattatatatatatatatatatattttattttttttgacatgtaCATATTTGCATTTCACCTGTGAtggaatgttattttttttactatcaTTTCATGTATTTGATTTGGGTCTTCCTCCATAGCCTTACGTACAAATAGCAGAGCATATCATCTATGTGGTTCTCGTGTCAAAAGTCGAGGAGTAGGCTTTAGCGTAATTTGCCaatgttgttttgtaaaaaaaattgtgaaattgTGTGAGGTTACACCTTGTTAGTCAAATACACATGTGTAATATCTGTGTAGCAAAAAAACTGTTTGAAAGTAGACTACGGAGTAACGTCGTGTAACCAAACCAAACAGGTGAATGAACAGGCCTGCGCTGTCAATGTGTCCAATGAACAGGTGAAGGACAGTCCATCATTTCTGACACGTGGGTCCTAACCCTATCATCATTTAATAAGATATGATacctctttttaataaacttttCAAATAAGAAGCTGTTTATCGAATACCGTGGCACAATGTAATGACATTTCCAGTGCCAGTCAAGTTGAATGAAGTATCTGCAAGTATTGTGATATGTTTGGTATTGTCAAGGTGTCCCCTTTACATATGGACGCTTATGAAAGCAATTAATGAGTAGAACAGGAATTAgtgccattttatttatatatttaagacTAATAAAATGACTTACAGTTTAAAGGTGGGCGAAAGATGGCTGACTAGAATTCAAAATGTGAGGGTATTATTTTATGTTAGATTTGCATCTGGTCCAGGATGtcttacaaaaaaacacacaaactagttttgtacttaaagtattattCCAGTTAAAACGCACACAGATGAAGCTCCATAACAGTGTGTAATTAAACTTGTGTTGACCAAATATTTGGCGTGATTGTTTCAGCTGTTGACATCCAGTTGTGTTAACACTGTCCTCTACCGCCGCGGCGGGGACATTTAATGTGTACTTCTGGTGAAATTCTTTTCTATGTGTGTTTCTACAGTTTATGAGGAACCGCaaaaaataccaataaaaaacaaaaaagtg

Function

GO: NA

KEGG:

id description
K08150 SLC2A13, ITR; MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310256 lncRNA downstream 179229 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 179999 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 368764 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 391511 18304585 ~ 18346997 (-) True LOC120553191
TU310303 lncRNA upstream 58071 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 70550 18893640 ~ 18975820 (-) True G228731
TU310370 lncRNA upstream 191565 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 338927 19162017 ~ 19270336 (-) False sox5
TU310454 lncRNA upstream 503531 19326621 ~ 19328343 (-) True G228824
XM_039792262.1 mRNA downstream 6842 18711014 ~ 18731666 (-) True LOC120553632
XM_039791682.1 mRNA downstream 33271 18667121 ~ 18705237 (-) False LOC120553351
XM_039791680.1 mRNA downstream 33271 18670449 ~ 18705237 (-) False LOC120553351
XM_039791681.1 mRNA downstream 33271 18670579 ~ 18705237 (-) False LOC120553351
XM_039791679.1 mRNA downstream 33271 18670579 ~ 18705237 (-) True LOC120553351
XM_039791407.1 mRNA upstream 205519 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA upstream 205519 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA upstream 205519 19028609 ~ 19270239 (-) False sox5
XM_039791405.1 mRNA upstream 205519 19028609 ~ 19270239 (-) True sox5
XM_039791413.1 mRNA upstream 205519 19028609 ~ 19116957 (-) False sox5
XR_005638136.1 other downstream 317101 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 637513 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 810803 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1436310 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1915076 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 615427 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 620142 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 623931 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 624974 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 628898 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile