RNA id: TU310334


Basic Information

Item Value
RNA id TU310334
length 2162
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G228731
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18893640 ~ 18975820 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGGGTAAATAGACTTTATTTCTCAAAGCATGTTTACAGTATTGAAaatgtcatttgtttatttcaacTCTTACCCCAGGAAATAATTCACTTTAATGCaacttttagaaaaaaaaaagaaaaaaaaaaaagaacttccTCTATGTACATTCATTGACATTTGAAAACAAGCAAGGATATTATTAAATGTGATTACTGTACATATAAACATATGCTAAAGTGGCCAGAGAAATTTTAGGACAGACTTTTGTACAATGTTAAATAGTAGTGGAGGTTCATATTATTAGCAGTACTACGATGGCCTATGTATAATGTACAGTGGAAATGCATTCATTTCAGATGGATGGGGAAATAAAGCATATAGGAAATATTTCAGCAGTATTTATAAAATTTGAACCATTCTGATTACGTGGCAGTCAAATTAGACAAGTGCATTCAATTTTGCGCATTGTGTAAATGTAGTCTGATAGTTACTACTAACCCAACAGACAACATTCTTTCTCATTCCTCCAACTCAAGTCAAACCAGTAACTTATCAAAATCCTTTACCACCAAatataaacatacattttaaattcatATTAGGCCCGACATAAACTACTTCTGAATTCTTCCATCTTAATTTAACAGCATGAAAAACACAAcactaaaataaagaaaataatatgCCTAACCTTCAAACTTCAAACCCGTAATTTCAAAACAAGAGCTTTCACAGGCACACCGGCAGAGGAGTGTGAACATAAGACATGGACCAGTCTCGTCAGTAATGGCTCTTCACGGAGCTTTGCAAACTTGTTGCAAGTGAGAATACCTGGGCAAACATGCGATTTGCAAACTGTTTTGGAGTAAACAAGAAAACGTGTTTCACCATATTTTACATGTAACGCTCATGTTTAAATTGCTCGGGAAAAATCAGGTGCTCTCCTGGCACTTTAAATTTTGTAATTCTTTCTTAAAAAATATGCTATATTTGCCCCCAATAATAATCTGCTACTGCATTAGCAAACATCTACACACTCTCAAAGACCTCACCCTCAACAAGTATAAAAAGTCTATAATAGTTATCCTAATTCTCTTTTTTGCTACATGGAAAATGATACAGTGTGCATTATGTACAAGCAAAAAACAGATGTCAGCACTTTGGTGTAGGCTTGTTAAAGTAACCAAGAGATTaacttgttttagttttttaaaaagGGCCTCCTAAAGCTCATTTAAAAACCAtgaacattttaacatgaaGGTCAAAGGTGAATAACAAGAACAGTCACCgacagcagacatttttttttttctccaacagATGGTGCTCTTGCTCCTCAGGTCCCACCAACAGATGACTTTCATTACaatgttttttaacaaaacagtATGTATGTAAGCAACCAACTCCAATTCTTTCAACAATGGgcacttaaaaatgtgcatacCAATAATGGCTCAGCAATCCGACAGTCATCAAGGCCGTATATCACACTTGTCCTAATACACACACGGGAGTGAAAACTGGtctaaaagtgtaaaaaaaaaaaaaaaacttacttcATGAGGAGTGAACAGCAGTGTTCTGTAATATTAGAGACGATTCCCAAACCTTCCCTGACACGGAGCAGACAATATAATTGTTTGGTCTCGTTTAGTACAGCATGCCTTTCGGTCAATGTCACAGTGAATAACGTCCCCTGCACTGCTAACTTACCATGTGAACTACAACCAAATTTCCTATCTAGCATTATGAACATGGAATGTTCAAATTACAGTGAGATGCAAGAGTGTCCCCAGTCAAAACTTCGACAAAAGCCAAGTGTCAAAACATGAAACGCACATTACAGTGAAAATCTCCCTCGAGTCAAAAGACCGCTCACTGATATACAGTACAACTATTGATGCTCTCCTACAACTCAACGTTTCTACCGTCAGTCCAGAAAGTCAAAACACACAAGTCCTTACCAAACTACACAGCACAATGACTGCACAGCTATTCTGGTGCACCACCCATGCGCGGTATGCCGATGGAAATGAGGGTGAAAACAAGCGAGTCACGAGGCAGGCcacaagtttgttttttgtttcgtTTTTGAGTAACTTATCTCACATGGGATTCAGGGACAGCGCTGGCCTTTCCATGttggaatttttttttgtttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310303 lncRNA downstream 9565 18881161 ~ 18884075 (-) True G228713
TU310292 lncRNA downstream 154130 18738396 ~ 18739510 (-) False LOC120553633
TU310256 lncRNA downstream 334361 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 335131 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 523896 18363259 ~ 18369744 (-) False gramd4a
TU310370 lncRNA upstream 38835 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 186197 19162017 ~ 19270336 (-) False sox5
TU310454 lncRNA upstream 350801 19326621 ~ 19328343 (-) True G228824
TU310457 lncRNA upstream 356821 19332641 ~ 19336028 (-) True G228826
TU310474 lncRNA upstream 387352 19363172 ~ 19363381 (-) True G228834
XM_039792263.1 mRNA downstream 70550 18738508 ~ 18823090 (-) True LOC120553633
XM_039792262.1 mRNA downstream 161974 18711014 ~ 18731666 (-) True LOC120553632
XM_039791680.1 mRNA downstream 188403 18670449 ~ 18705237 (-) False LOC120553351
XM_039791407.1 mRNA upstream 52789 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA upstream 52789 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA upstream 52789 19028609 ~ 19270239 (-) False sox5
XM_039791405.1 mRNA upstream 52789 19028609 ~ 19270239 (-) True sox5
XM_039791413.1 mRNA upstream 52789 19028609 ~ 19116957 (-) False sox5
XR_005638136.1 other downstream 472233 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 792645 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 965935 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1591442 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2070208 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 462697 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 467412 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 471201 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 472244 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 476168 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile