RNA id: XM_039791401.1


Basic Information

Item Value
RNA id XM_039791401.1
length 4152
RNA type mRNA
GC content 0.53
exon number 15
gene id sox5
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19028609 ~ 19270336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgagtagagagacagagaggaacacacagagagagagagagagagagaacgagaatcagcagtgtgtgtgagaggttgAAGGATCACTTCTATCCCGTTTTGTTTTGGGGAGACTAACCTTGTTCATCTGAGCATTTGTGGGActgttttatgttgttgttgacGAGAGACACGGACCCTTACTCCAGCATGCTCACTGAGCCTGAGCTACCTCAGGAGTGTAACAGgatgTCTTCCAAGCGACCAGCCTCTCCATATGGGCGGACAGATGGAGAGGTAACCATGGCAACCAGCAGACAGCGAATGGAGGATGAAGATAGCGAGGGACTGGGTGGTGTCATCCACCTCCCCCTGGTCTCCTACTGCGGCAAGGTGTCCCCTCGCTCGCCCCCCAACCGCAACTTGGACAGCCCCCCTAACATGGAGCGGGACTGCACTAAAGGAAGCTCTCTGAGTCCTTACCCCCAGCACAATGCTACCTCACCGGGCAAAGAGGATGGCGGAGGTGGAGGGCGGCCCTGCAGCGACGGGGGCTCGGCCACAGGTACCCTGGGGACCCCCGAGAGACGCAAGGGCAGCCTGGCAGACGTGGTGGACACACTGAAACAACGCAAGATGGAGGAGCTGATCAAGAACGAGCCAGAAGAGGCCCCCAGCATTGAGAGGCTGTTGTCAAAGGACTGGAAGGATAAACTTTTGGCCATGGGCTCAGGGCACATCGGGGAAATTAAAGGTACTGCAGACAGCCTGGCGGAGAAAGAGCGCCAACTCATGGGCATGATTGGCCAGTTGAGCAGCCTGAGGGAGCAGCTCCTGGCGGCCCATGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATGGAGAAGCAAAGGCAGCAGATGGAGCTGGCCAAGCAGCAGCAGGACCAGATTGCCcggcaacagcagcagcttctgcagcagcaacacaaaatCAACCTCCTGCAGCAACAAATCCAGCAGGTCCAGGGCCAACTCCCTCCGCTGATGATTCCCGTCTTTCCTCCGGACCAGAGGACTCTGGCAGCGGCTGCAGCCCAGCAAGGCTTCCTAATGCCCCCTGGCTTCAACTACAAGCCTGGCTGCAGTGACCCGTACCCTCTCCAGCTCATCCCCACAacaatggctgctgctgctgctgccacacCAGGCCTGGGACCCCTACAACTCCAGCAGTTGTACGCAGCTCAGCTGGCGGCCATGCAGGTTTCCCCGGGAGCCAAGCAGCACGGAGGCAGCCTGCCCCCCCAGGCCAACATGGGCACACACTCCCCAcccaccaacacacactcacagagcgACAAGGGCCGCAGCTCCCCGCTACCAAACAAGGCCAAGGACAGTGAGGGTGCACAGCCACTGAACCTGTCGGCCAAGCCTAAGGCATCCGAGAGCAAGTCACCCAACTCCCCCCCAACTTCCCCACAggtcgctgctgctgctgccactaAGCTGGGCCCCGCCGGCTCCATGAAGCACAGTGTCGCCCCCTCCAGCATCGGAGGTCCACCGACCAGAGTCAGCTCGATAGACTTGTTGTCGACGCTGTCCACGACCGCCTACCTGAACGACCACGAGGCGGTGAGCAAGGCCTTCGCCGAGGCCCGGCAGATGAAGGAGCAGctgaagagagagcagcaggtCCTGGACGCCAAGGTTTCCGCCGTCAGCAATCTCAGCCTCAACAATGGACGCTCAGACAAGGACAAGGCTGCCTTGGAGAGTCTGAGTCAACAGCTTAAGCAGCAGGCGGAGGACAAGTTCAGCCACGCCATGCTGGACTTCACCATGAGCGGAGACTCTGACgGCTCCCCCAGCGTGTCAGACTCCAGAATATTTCGGGAGGCTCGGGGTCGTGGCAGCGCCGAGCCGCACATCAAGCGGCCGATGAACGCCTTCATGGTTTGGGCCAAGGACGAGAGGAGAAAGATTCTCCAGGCCTTCCCCGACATGCACAATTCCAACATCAGCAAGATCCTCGGCTCCCGCTGGAAAGCCATGACCAACCTGGAGAAGCAGCCCTACTATGAGGAGCAGGCTCGCCTCAGCAAGCAGCATCTGGAAAAATACCCAGACTACAAGTACAAGCCGCGACCCAAACGCACCTGCCTGGTGGACGGCAAAAAGCTGCGCATCGGCGAGTACAAGGCCATCATGAGATCCCGCAGACAGGAAATGAGACAATACTTCAGTGTGGGgCAGCAGGGCCAGTTGCCCTTGTCCTCCGCAGGCGTGGTTTACCCAGGTGCCCTGTCAATGGCGGGAATCCCCTCACCCCAGATTCCCTCAGAGCACTCCAGCATGTCCAGCAGCCCCGAGCCCAACGCCAACCACCACCAAAACCCCCACATGGCAGGCCTGAAGGGGGACGAGCCCCGGATCAAGGAGGAGGAGCTGCGGCTGGACGACAGCAACGGCGACGTGTACGACGACTTTGACTACGAGGACGAAGAGGCAGATTACACCAGCGATAACGAGAACCATATCACCCAATAGGACGGCGTGGCCGGCGCCTAATTCGAAGCCAATCGCAGCTGGTTAATCCCACACAATCCCAAACCCACCAATCAGGAAGAAAACGTTCTCTTTTTTGCCAATCACCATGAGTCCCAATCTCACAGCACCCCGCCACCCTCTCCCCTTCCTGACTAACACGGACTCTTCTAACAGAGCCAAAGCCCTCCCACTGGAGTCCTGATACCAGCATCTGATCAATCAACTGAAGCACAGGACCTGTCACTCACACTGACTGTTACACAAACTGGAGTCTGGGAGGAAGAGACGACCAAGCCAGCCTCTGATGCTTGCGGAGGAATATTCAAGTACTACTGCAAGATTTTGAGTGTAATGCCACGAGTCAGGAGAAATTAAAAGTCACACTCAGAAAGCAAACCTTTTAGACCCGTTTGTAGAAAAAGGAGACATTTTCAGATGAAAGATGAATCAGTGGACCTGTCAAAGGCAAACAGATGACACTTTAAGATGGCGGACCTGTTTATTATCAAGagacacttttaaaaaaaaaaatgtaaaaaaaaaacagcttttttttgttctttggttCTATAATATTCTCACTCAGGTACACGGTGCCAATAAGTGGCTTGTGAATgtgatttgttgtttttgtgctaCAAGTTTgaataataatagaaaaaaagagatttctttttttccccattcgTCGTAAAGCACCTGAAAGACATCAGACgtgtttatttttaacaaaaaaaaaacaacttatcTTTTCTTCAACCTCGCAgtgtgctgtcagctgttccCCCCAatttttctctgtgtttttgtgactgCCCGCTCCCCCCCTAATTTGGAATCCGATGGGACAGTCCAGCCAGGACTGACCAGTAGAGCGTGGACTGTCCCACTTTGAGGGATTTCCATGGGGGGAGAAGGGAAGTCTCTCTGGCATCACGGAGCAGAAACGAAAGCACTGTGTTGCGAGACAATCCATCAGTTTTCTTCTCACTCCGTCCCTCTATCTCGATCTCGTCCAGGGCAAAACATCAGTACGACTTAGCTTgagtgtgtgtcggtgtgtgctGGGTTTACTCATTTATTGGCCGTTTTGCACATGCGTGTAAAATCGAGCGAGAAAAAGGCTAAAAACGTCTAGGATACAGAAAATCAGGCTTACGCTGCTGCTGTAATTTACTgtaccacacacatatatatacacactcacacacacacacaactgttgTTCTGTCCCTCAGTGTTTTCCTGCTCCCTCCAATTAACATCGTCCTGCTGTCCTTGGTGGGCGGAGCTAAGCTGAAGCAGCCAgtcagtgtttctgtttgtatttgaatactgtattttattatttctctTCAAACTGCCTCTAGtctaataatattattaacaatAATTATAAGGATGGTCAGCGTTTCCTAAGTTTAGTAAgttatgtacagtataatttatttttctcctCTTTATCGGGTTTTTATGACCATATGAAACTATGACAGTCAATGAAACATTATTCTATTTAGCTGGTAGGTATTTAGATCTAAACAAAAGTTGTCATTTTACCTTGCTTTGTTTTGCATTCTTTTGTTCCCTTCTTTTTTGATGCATTTGTTTTGTATTAATCCTccggactggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310370 lncRNA downstream 6367 19014655 ~ 19022242 (-) True G228759
TU310334 lncRNA downstream 52789 18893640 ~ 18975820 (-) True G228731
TU310303 lncRNA downstream 144534 18881161 ~ 18884075 (-) True G228713
TU310292 lncRNA downstream 289099 18738396 ~ 18739510 (-) False LOC120553633
TU310256 lncRNA downstream 469330 18558601 ~ 18559279 (-) True G228683
TU310342 lncRNA upstream 45060 19162017 ~ 19270336 (-) False sox5
TU310454 lncRNA upstream 209664 19326621 ~ 19328343 (-) True G228824
TU310457 lncRNA upstream 215684 19332641 ~ 19336028 (-) True G228826
TU310474 lncRNA upstream 246215 19363172 ~ 19363381 (-) True G228834
TU310475 lncRNA upstream 247199 19364156 ~ 19364416 (-) True G228835
XM_039792263.1 mRNA downstream 205519 18738508 ~ 18823090 (-) True LOC120553633
XM_039792262.1 mRNA downstream 296943 18711014 ~ 18731666 (-) True LOC120553632
XM_039791680.1 mRNA downstream 323372 18670449 ~ 18705237 (-) False LOC120553351
XM_039791267.1 mRNA upstream 180965 19297922 ~ 19309684 (-) True bcat1
XM_039791268.1 mRNA upstream 180965 19297922 ~ 19309593 (-) False bcat1
XM_039791261.1 mRNA upstream 229361 19346318 ~ 19353490 (-) True dnai7
XM_039791263.1 mRNA upstream 229425 19346382 ~ 19353491 (-) False dnai7
XM_039791262.1 mRNA upstream 229425 19346382 ~ 19353490 (-) False dnai7
XR_005638136.1 other downstream 607202 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 927614 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1100904 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1726411 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2205177 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 321560 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 326275 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 330064 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 331107 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 335031 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile