RNA id: XM_039791271.1


Basic Information

Item Value
RNA id XM_039791271.1
length 2089
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC120553164
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19352983 ~ 19355551 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAACGACGTACGGCTGTGTCCAGCTATGTTCAGTGCGTGGACGAAGAAGTACTCTTATTGTCCATACATTGTGTTGTCGCAgGAGTGTGAAAGGCCACCTGGTTTCTGACATGGCCAACCCTTTCAGGGGTCAGGTTATCAAACTTTACAGAACTCTGCTGTATCTTGGCCGTGACTACCCCCAGGGATCAGCTTATTTCAAAGAGCGCCTGAAGTCCGCTTTCATGAAGAATAAAGACGTGACAGACCCTGATAAGATCCAAAAGCTGGTAGCCCGTGGCAACTGTCTCATCAAGGAACTGGAAGCTATGTGTTTCCTCAGGAAATATCAAGTCATGAAGAAGAAGTAttgccaaacaaaaaaataatcacacagTTATCCTTCAGGGTGGGAGGAGAGTACAGTCAATGTGTTAATATTTAATGTATCATATTTTGTATCAGTGTTATTTTCACACGTACCTCTATCAATGAGATTCAGTACACATTACTCTGCAGAAATGACCCAACAATTGCCCTTAGATAAAAATGAACTATGCTTGTGTCATAAGGGAAATAGACATCCATCTGTAGGAAGTGCCAGAAAGTGATAATAATGCAGCTGTAACAGAATGTGctctatatttttttataccCAAGTTGTACCTTTTAAAGGCCTGTGTTTTAAAtcaatactgtatatatgttaaTATTATAGGTTTTCCTCTAAAACAGTTCTAAACTCAGGAAGCCTAGGTATTAGACTAACTGAATCATATTGTACAATGTATTTtcagtgtatatatttgtagAAGGTGCATGACTATGTATGAATGCACTATTAGGTAGAAAACAAACAGATGCCTTGTATAATAAATAAGTCACAGCAGTGTCCTTCCTGCGTTTAACTTCTTTTGCTGTCATTGCTTTTATGAGATTGTACCCTaaatatattcaatattttGTATCAAGAAATTGTCACAAAATATGTCAAACATATTGATTTATAATTGTTAAAAATCTGCAAGGTTAGAAACTCTGACTACTTTGAGAATTGCATGAGGGGAAAATGAAATTTCAAAAGTGGTAGAAAGTCTTACAAATAGTAAAATCTGTTCAGATGCAAATCCCAAATTTCCCGTATGTTGtcattttgacttttattttaaaactgaTTAGTCTTATTTATGGCAAATGACAAAACTGAACAGCAATCATGAAGTGTCTAATAATAATCAAACTGAATTACTGAGTGTGCCTGGattatattttacagtttcTATGAGCCAAGGCAACATTTGAAGTGTAATATTAAACCCTGCATAGAAATGGTGTACAATGCTGACTTGGTGTCACAAGCTGTTGTTTTGCATCTTAATTTTTATCCCTCCAGATAAACACTCCCCCTCTTTTTATGCCAACTATTGCAAGTAATGTCATACTATATGAGTCAATCATTCATCACAAACAGTCATGCACTTACTTGACATCCCTTTTCTGTCCTGGGGCTGTGGTTCGGCCGAGGCTTTCTGTAGTGACCACTTAAAGCCCGTGGTCAGTGACATGGGTTAGGGTTACCAGCAGACACATAGACCCATCATTTGGATTTGGTTACCAAATTCTTCTCACATTTCCTGTCAGTGACATAAAATAGACAGtaaaatatacaatataaaaGGCTGTTAGGGTGTTACTGTACATCAAGTCATGTAGACCTGGGATGTTTCAGTTAACAAGTAATGATTATAATACTAAACCATTAAGGTTCAAATTAAAACTAATTTGTAACAGAAAGCATTCAGCTGGTGAAACACGTTTGAACACGTTTATAAGGGTTAttgtttaaagaaaacattcagcAGGCTGGATCAGAAACGGGCATGTTAGGAAGAGATTATATTCACATTTGTAATGATGATGACGATGGAAGGATGACAGTAACAGTACACACTGTGTTCGTAGCTTGTTGACGATACGGTGATATGTCTTTCTTGATAATTTATCTACCTTATGCCATACTGTAATTtactgtgtattttgtgtgctttttatatatgtatctatGCTTTATGCCTGCTgcgaaataataataaagatcaGTGAACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638159.1 lncRNA upstream 444102 18905236 ~ 18908881 (+) True LOC120553381
XR_005638160.1 lncRNA upstream 455456 18892174 ~ 18897527 (+) True LOC120553383
TU310196 lncRNA upstream 497669 18850047 ~ 18855314 (+) False LOC120553630
TU310155 lncRNA upstream 613499 18738484 ~ 18739484 (+) True G228622
TU310143 lncRNA upstream 675418 18676351 ~ 18677565 (+) True G228611
TU310405 lncRNA downstream 64821 19420372 ~ 19420829 (+) True G228787
XR_005638191.1 lncRNA downstream 168524 19524075 ~ 19559043 (+) True LOC120553618
TU310544 lncRNA downstream 338482 19694033 ~ 19819189 (+) False LOC120553210
TU310546 lncRNA downstream 338482 19694033 ~ 19839382 (+) False LOC120553210
TU310548 lncRNA downstream 338482 19694033 ~ 19732007 (+) False LOC120553210
XM_039791260.1 mRNA upstream 6703 19311505 ~ 19346280 (+) True LOC120553161
XM_039791100.1 mRNA upstream 378343 18961085 ~ 18974640 (+) True etnk1
XM_039791098.1 mRNA upstream 393135 18951283 ~ 18959848 (+) True pyroxd1
XM_039791099.1 mRNA upstream 393135 18951283 ~ 18959848 (+) False pyroxd1
XM_039791725.1 mRNA upstream 404468 18946158 ~ 18948515 (+) True LOC120553379
XM_039791043.1 mRNA downstream 8652 19364203 ~ 19396806 (+) True utp20
XM_039792101.1 mRNA downstream 99273 19454824 ~ 19470973 (+) True mapk11
XM_039792102.1 mRNA downstream 99273 19454824 ~ 19468180 (+) False mapk11
XM_039792511.1 mRNA downstream 117599 19473150 ~ 19479275 (+) True LOC120553798
XM_039792512.1 mRNA downstream 123366 19478917 ~ 19483152 (+) True LOC120553799
TU310117 other upstream 821815 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1762820 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 2430160 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 2521740 16771058 ~ 16831243 (+) False cald1a
TU310402 other downstream 54939 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 103532 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 276396 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 276396 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 626697 19982248 ~ 19985648 (+) True G228924

Expression Profile