RNA id: TU310457


Basic Information

Item Value
RNA id TU310457
length 427
lncRNA type inter_gene
GC content 0.56
exon number 5
gene id G228826
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19332641 ~ 19336028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCGCTGCTGGTGAGCCGCTCTGTCCCTTCCATGCTGGCGGCTACTGTTGGCACCTCGGCTGTAGTGTCCTGCACACTCTCCTCCTCTTCAACCAACACAGGTAGCAGGCACGTGCTGTCCTCCGCTACTGATCTGTCTACCGACTGGTCCCGCTTCAGGCTCTTAGTATGACTCATGGCTCCTGTGCTCGAGTCCGCTTcaccttctttctcttcttctccccCGTGGTCCTCACTGGCCGGCTGGGTGcTCTCAGTCTGGTTAATGTTCTCATCTGGTCCAGGTGATGTGCTGTCGGGAGGAACCATCTGGTCTGCTGTGGGAGTGGTGTTACTAAGTGTCACCATTTGGTCCTGTTCAGGTGAGTTGCTCAAATTCTCAGTTGGACCACAGGTTGAAGACTCTGCAGTCTCAACAGACTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310454 lncRNA downstream 4298 19326621 ~ 19328343 (-) True G228824
TU310342 lncRNA downstream 62305 19162017 ~ 19270336 (-) False sox5
TU310370 lncRNA downstream 310399 19014655 ~ 19022242 (-) True G228759
TU310334 lncRNA downstream 356821 18893640 ~ 18975820 (-) True G228731
TU310303 lncRNA downstream 448566 18881161 ~ 18884075 (-) True G228713
TU310474 lncRNA upstream 27144 19363172 ~ 19363381 (-) True G228834
TU310475 lncRNA upstream 28128 19364156 ~ 19364416 (-) True G228835
TU310476 lncRNA upstream 29096 19365124 ~ 19365528 (-) True G228836
TU310478 lncRNA upstream 38176 19374204 ~ 19375361 (-) True G228838
TU310479 lncRNA upstream 39431 19375459 ~ 19375795 (-) True G228839
XM_039791267.1 mRNA downstream 22957 19297922 ~ 19309684 (-) True bcat1
XM_039791268.1 mRNA downstream 23048 19297922 ~ 19309593 (-) False bcat1
XM_039791400.1 mRNA downstream 215684 19028609 ~ 19116957 (-) False sox5
XM_039791261.1 mRNA upstream 10290 19346318 ~ 19353490 (-) True dnai7
XM_039791263.1 mRNA upstream 10354 19346382 ~ 19353491 (-) False dnai7
XM_039791262.1 mRNA upstream 10354 19346382 ~ 19353490 (-) False dnai7
XM_039791266.1 mRNA upstream 10354 19346382 ~ 19353490 (-) False dnai7
XM_039791265.1 mRNA upstream 10354 19346382 ~ 19353489 (-) False dnai7
XR_005638136.1 other downstream 911234 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1231646 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1404936 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2030443 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2509209 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 102489 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 107204 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 110993 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 112036 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 115960 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile